Analysis of interatomic Contacts of Structural Units in PDB entry:
8CUZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CUZ entry

There are 2 chains in PDB entry 8CUZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 89	PHE 1074
B	ASP 89	PHE 1074

There are 80 helices in PDB entry 8CUZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	114	125	Right-handed alpha
Helix 2	AA2	A	143	153	Right-handed alpha
Helix 3	AA3	A	167	172	Right-handed alpha
Helix 4	AA4	A	174	180	Right-handed alpha
Helix 5	AA5	A	182	199	Right-handed alpha
Helix 6	AA6	A	202	207	Right-handed 310
Helix 7	AA7	A	221	227	Right-handed alpha
Helix 8	AA8	A	235	242	Right-handed alpha
Helix 9	AA9	A	244	254	Right-handed alpha
Helix 10	AB1	A	265	267	Right-handed 310
Helix 11	AB2	A	268	283	Right-handed alpha
Helix 12	AB3	A	300	310	Right-handed alpha
Helix 13	AB4	A	343	350	Right-handed alpha
Helix 14	AB5	A	375	391	Right-handed alpha
Helix 15	AB6	A	393	397	Right-handed 310
Helix 16	AB7	A	409	422	Right-handed alpha
Helix 17	AB8	A	437	442	Right-handed alpha
Helix 18	AB9	A	447	462	Right-handed alpha
Helix 19	AC1	A	479	484	Right-handed alpha
Helix 20	AC2	A	523	528	Right-handed 310
Helix 21	AC3	A	589	609	Right-handed alpha
Helix 22	AC4	A	623	640	Right-handed alpha
Helix 23	AC5	A	640	645	Right-handed alpha
Helix 24	AC6	A	649	657	Right-handed alpha
Helix 25	AC7	A	671	684	Right-handed alpha
Helix 26	AC8	A	718	724	Right-handed alpha
Helix 27	AC9	A	725	743	Right-handed alpha
Helix 28	AD1	A	746	751	Right-handed alpha
Helix 29	AD2	A	764	787	Right-handed alpha
Helix 30	AD3	A	800	809	Right-handed alpha
Helix 31	AD4	A	812	834	Right-handed alpha
Helix 32	AD5	A	848	856	Right-handed alpha
Helix 33	AD6	A	878	892	Right-handed alpha
Helix 34	AD7	A	907	909	Right-handed 310
Helix 35	AD8	A	910	921	Right-handed alpha
Helix 36	AD9	A	952	962	Right-handed alpha
Helix 37	AE1	A	965	977	Right-handed alpha
Helix 38	AE2	A	989	1001	Right-handed alpha
Helix 39	AE3	A	1021	1032	Right-handed alpha
Helix 40	AE4	A	1037	1042	Right-handed 310
Helix 41	AE5	B	114	125	Right-handed alpha
Helix 42	AE6	B	143	153	Right-handed alpha
Helix 43	AE7	B	167	172	Right-handed alpha
Helix 44	AE8	B	174	180	Right-handed alpha
Helix 45	AE9	B	182	199	Right-handed alpha
Helix 46	AF1	B	202	207	Right-handed 310
Helix 47	AF2	B	221	227	Right-handed alpha
Helix 48	AF3	B	235	242	Right-handed alpha
Helix 49	AF4	B	244	254	Right-handed alpha
Helix 50	AF5	B	265	267	Right-handed 310
Helix 51	AF6	B	268	283	Right-handed alpha
Helix 52	AF7	B	300	310	Right-handed alpha
Helix 53	AF8	B	343	350	Right-handed alpha
Helix 54	AF9	B	375	391	Right-handed alpha
Helix 55	AG1	B	393	397	Right-handed 310
Helix 56	AG2	B	409	422	Right-handed alpha
Helix 57	AG3	B	437	442	Right-handed alpha
Helix 58	AG4	B	447	462	Right-handed alpha
Helix 59	AG5	B	479	484	Right-handed alpha
Helix 60	AG6	B	523	528	Right-handed 310
Helix 61	AG7	B	589	609	Right-handed alpha
Helix 62	AG8	B	623	640	Right-handed alpha
Helix 63	AG9	B	640	645	Right-handed alpha
Helix 64	AH1	B	649	657	Right-handed alpha
Helix 65	AH2	B	671	684	Right-handed alpha
Helix 66	AH3	B	718	724	Right-handed alpha
Helix 67	AH4	B	725	743	Right-handed alpha
Helix 68	AH5	B	746	751	Right-handed alpha
Helix 69	AH6	B	764	787	Right-handed alpha
Helix 70	AH7	B	800	809	Right-handed alpha
Helix 71	AH8	B	812	834	Right-handed alpha
Helix 72	AH9	B	848	856	Right-handed alpha
Helix 73	AI1	B	878	892	Right-handed alpha
Helix 74	AI2	B	907	909	Right-handed 310
Helix 75	AI3	B	910	921	Right-handed alpha
Helix 76	AI4	B	952	962	Right-handed alpha
Helix 77	AI5	B	965	977	Right-handed alpha
Helix 78	AI6	B	989	1001	Right-handed alpha
Helix 79	AI7	B	1021	1032	Right-handed alpha
Helix 80	AI8	B	1037	1042	Right-handed 310

There are 14 sheets in PDB entry 8CUZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	263	first strand
Strand 2	A	211	216	parallel
Strand 3	A	288	295	parallel
Strand 4	A	334	342	anti-parallel
Strand 5	A	99	106	anti-parallel
Strand 6	A	355	364	anti-parallel
Strand 7	A	513	520	anti-parallel
Strand 8	A	502	508	anti-parallel
Strand 9	A	399	401	parallel
Strand 10	A	432	435	parallel
Strand 11	A	485	487	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	156	157	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	166	first strand
Strand 2	A	1066	1067	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	443	444	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	621	first strand
Strand 2	A	663	669	anti-parallel
Strand 3	A	691	693	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	941	943	first strand
Strand 2	A	932	935	anti-parallel
Strand 3	A	793	796	parallel
Strand 4	A	703	706	parallel
Strand 5	A	980	983	parallel
Strand 6	A	1007	1010	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	841	845	first strand
Strand 2	A	872	877	anti-parallel
Strand 3	A	863	869	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	263	first strand
Strand 2	B	211	216	parallel
Strand 3	B	288	295	parallel
Strand 4	B	334	342	anti-parallel
Strand 5	B	99	106	anti-parallel
Strand 6	B	355	364	anti-parallel
Strand 7	B	513	520	anti-parallel
Strand 8	B	502	508	anti-parallel
Strand 9	B	399	401	parallel
Strand 10	B	432	435	parallel
Strand 11	B	485	487	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	156	157	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	1066	1067	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	332	first strand
Strand 2	B	443	444	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	621	first strand
Strand 2	B	663	669	anti-parallel
Strand 3	B	691	693	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	941	943	first strand
Strand 2	B	932	935	anti-parallel
Strand 3	B	793	796	parallel
Strand 4	B	703	706	parallel
Strand 5	B	980	983	parallel
Strand 6	B	1007	1010	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	841	845	first strand
Strand 2	B	872	877	anti-parallel
Strand 3	B	863	869	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CUZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CUZ