Analysis of interatomic Contacts of Structural Units in PDB entry:
8CV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CV1 entry

There are 2 chains in PDB entry 8CV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 1074
B
 ASP 89PHE 1074
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 8CV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
30 35Right-handed 310
Helix 3
AA3
A
38 52Right-handed alpha
Helix 4
AA4
A
59 64Right-handed alpha
Helix 5
AA5
A
66 76Right-handed alpha
Helix 6
AA6
A
114 125Right-handed alpha
Helix 7
AA7
A
143 153Right-handed alpha
Helix 8
AA8
A
174 180Right-handed alpha
Helix 9
AA9
A
182 199Right-handed alpha
Helix 10
AB1
A
202 207Right-handed 310
Helix 11
AB2
A
221 227Right-handed alpha
Helix 12
AB3
A
235 241Right-handed alpha
Helix 13
AB4
A
242 255Right-handed alpha
Helix 14
AB5
A
268 283Right-handed alpha
Helix 15
AB6
A
300 310Right-handed alpha
Helix 16
AB7
A
343 350Right-handed alpha
Helix 17
AB8
A
375 391Right-handed alpha
Helix 18
AB9
A
393 397Right-handed 310
Helix 19
AC1
A
409 422Right-handed alpha
Helix 20
AC2
A
437 442Right-handed alpha
Helix 21
AC3
A
447 463Right-handed alpha
Helix 22
AC4
A
479 484Right-handed alpha
Helix 23
AC5
A
523 528Right-handed 310
Helix 24
AC6
A
589 609Right-handed alpha
Helix 25
AC7
A
623 640Right-handed alpha
Helix 26
AC8
A
640 645Right-handed alpha
Helix 27
AC9
A
647 657Right-handed alpha
Helix 28
AD1
A
671 684Right-handed alpha
Helix 29
AD2
A
717 724Right-handed alpha
Helix 30
AD3
A
724 742Right-handed alpha
Helix 31
AD4
A
745 752Right-handed alpha
Helix 32
AD5
A
764 787Right-handed alpha
Helix 33
AD6
A
800 808Right-handed alpha
Helix 34
AD7
A
812 833Right-handed alpha
Helix 35
AD8
A
835 839Right-handed 310
Helix 36
AD9
A
848 853Right-handed alpha
Helix 37
AE1
A
878 892Right-handed alpha
Helix 38
AE2
A
907 911Right-handed 310
Helix 39
AE3
A
913 921Right-handed alpha
Helix 40
AE4
A
952 962Right-handed alpha
Helix 41
AE5
A
965 976Right-handed alpha
Helix 42
AE6
A
990 1001Right-handed alpha
Helix 43
AE7
A
1017 1032Right-handed alpha
Helix 44
AE8
A
1037 1042Right-handed 310
Helix 45
AE9
A
1051 1055Right-handed 310
Helix 46
AF1
B
114 125Right-handed alpha
Helix 47
AF2
B
143 153Right-handed alpha
Helix 48
AF3
B
174 180Right-handed alpha
Helix 49
AF4
B
182 199Right-handed alpha
Helix 50
AF5
B
202 207Right-handed 310
Helix 51
AF6
B
221 227Right-handed alpha
Helix 52
AF7
B
235 241Right-handed alpha
Helix 53
AF8
B
242 255Right-handed alpha
Helix 54
AF9
B
268 283Right-handed alpha
Helix 55
AG1
B
300 310Right-handed alpha
Helix 56
AG2
B
343 350Right-handed alpha
Helix 57
AG3
B
375 391Right-handed alpha
Helix 58
AG4
B
393 397Right-handed 310
Helix 59
AG5
B
409 422Right-handed alpha
Helix 60
AG6
B
437 442Right-handed alpha
Helix 61
AG7
B
447 463Right-handed alpha
Helix 62
AG8
B
479 484Right-handed alpha
Helix 63
AG9
B
523 528Right-handed 310
Helix 64
AH1
B
589 609Right-handed alpha
Helix 65
AH2
B
623 640Right-handed alpha
Helix 66
AH3
B
640 645Right-handed alpha
Helix 67
AH4
B
647 657Right-handed alpha
Helix 68
AH5
B
671 684Right-handed alpha
Helix 69
AH6
B
717 724Right-handed alpha
Helix 70
AH7
B
724 742Right-handed alpha
Helix 71
AH8
B
745 752Right-handed alpha
Helix 72
AH9
B
764 787Right-handed alpha
Helix 73
AI1
B
800 808Right-handed alpha
Helix 74
AI2
B
812 833Right-handed alpha
Helix 75
AI3
B
835 839Right-handed 310
Helix 76
AI4
B
848 853Right-handed alpha
Helix 77
AI5
B
878 892Right-handed alpha
Helix 78
AI6
B
907 911Right-handed 310
Helix 79
AI7
B
913 921Right-handed alpha
Helix 80
AI8
B
952 962Right-handed alpha
Helix 81
AI9
B
965 976Right-handed alpha
Helix 82
AJ1
B
990 1001Right-handed alpha
Helix 83
AJ2
B
1017 1032Right-handed alpha
Helix 84
AJ3
B
1037 1042Right-handed 310
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There are 11 sheets in PDB entry 8CV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 487first strand
Strand 2
A
432 435parallel
Strand 3
A
399 401parallel
Strand 4
A
502 508parallel
Strand 5
A
513 520anti-parallel
Strand 6
A
355 364anti-parallel
Strand 7
A
99 107anti-parallel
Strand 8
A
334 342anti-parallel
Strand 9
A
288 295anti-parallel
Strand 10
A
211 216parallel
Strand 11
A
260 264parallel
Strand 12
B
260 264anti-parallel
Strand 13
B
211 216parallel
Strand 14
B
288 295parallel
Strand 15
B
334 342anti-parallel
Strand 16
B
99 107anti-parallel
Strand 17
B
355 364anti-parallel
Strand 18
B
513 520anti-parallel
Strand 19
B
502 508anti-parallel
Strand 20
B
399 401parallel
Strand 21
B
432 435parallel
Strand 22
B
485 487parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
1066 1067anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
443 444parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 621first strand
Strand 2
A
663 669anti-parallel
Strand 3
A
691 694anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
941 943first strand
Strand 2
A
932 935anti-parallel
Strand 3
A
793 796parallel
Strand 4
A
703 706parallel
Strand 5
A
980 983parallel
Strand 6
A
1007 1010parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
863 869first strand
Strand 2
A
872 877anti-parallel
Strand 3
A
841 845anti-parallel
Strand 4
A
896 898anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
1066 1067anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 332first strand
Strand 2
B
443 444parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 621first strand
Strand 2
B
663 669anti-parallel
Strand 3
B
691 694anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
941 943first strand
Strand 2
B
932 935anti-parallel
Strand 3
B
793 796parallel
Strand 4
B
703 706parallel
Strand 5
B
980 983parallel
Strand 6
B
1007 1010parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
863 869first strand
Strand 2
B
872 877anti-parallel
Strand 3
B
841 845anti-parallel
Strand 4
B
896 898anti-parallel
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