Analysis of interatomic Contacts of Structural Units in PDB entry:
8CVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CVM entry

There are 51 chains in PDB entry 8CVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
c	GLY 2	GLY 275
d	GLU 4	ALA 217
e	GLU 3	ALA 212
f	ALA 7	LYS 209
g	SER 2	ALA 178
i	THR 2	GLN 147
j	MET 1	ILE 122
k	ALA 2	LYS 145
l	MET 1	GLY 136
m	PRO 2	ALA 121
n	ALA 2	PHE 127
o	SER 2	SER 115
p	ALA 2	ASN 120
q	MET 1	GLY 102
r	MET 1	ALA 132
s	GLU 3	PHE 97
t	MET 1	GLU 120
u	ASP 3	THR 181
v	ALA 7	GLU 84
w	ALA 2	ARG 61
x	LYS 3	PRO 71
y	MET 2	GLU 59
z	ALA 2	ALA 63
0	ASP 7	ARG 56
1	MET 1	ALA 44
2	PRO 2	ARG 68
4	MET 1	GLY 66
a	C 2	G 1037
a	G 1039	U 2017
a	C 2019	G 2093
a	A 2095	C 2097
a	A 2099	A 2099
a	A 2101	A 2121
a	U 2123	C 2144
a	U 2146	G 2432
a	G 2434	G 2626
a	G 2628	A 2630
a	A 2632	C 2638
a	G 2640	A 2679
a	C 2681	G 2684
a	G 2687	C 2733
a	G 2735	C 2761
a	G 2763	G 2785
a	C 2788	A 3080
b	U 1	U 120
V	GLY 2	ALA 24
C	G 2	G 7
C	G 9	G 31
C	U 33	G 53
C	C 56	A 76
3	MET 1	GLY 37

There are 94 helices in PDB entry 8CVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	c	30	32	Right-handed 310
Helix 2	AA2	c	69	73	Right-handed 310
Helix 3	AA3	c	200	204	Right-handed 310
Helix 4	AA4	c	208	216	Right-handed alpha
Helix 5	AA5	c	222	226	Right-handed 310
Helix 6	AA6	c	263	265	Right-handed 310
Helix 7	AA7	d	62	66	Right-handed 310
Helix 8	AA8	d	67	78	Right-handed alpha
Helix 9	AA9	d	92	96	Right-handed 310
Helix 10	AB1	d	103	107	Right-handed 310
Helix 11	AB2	d	126	131	Right-handed alpha
Helix 12	AB3	e	12	16	Right-handed 310
Helix 13	AB4	e	32	48	Right-handed alpha
Helix 14	AB5	e	105	123	Right-handed alpha
Helix 15	AB6	e	138	150	Right-handed alpha
Helix 16	AB7	e	164	172	Right-handed alpha
Helix 17	AB8	e	181	185	Right-handed 310
Helix 18	AB9	e	186	193	Right-handed alpha
Helix 19	AC1	e	200	210	Right-handed alpha
Helix 20	AC2	f	11	30	Right-handed alpha
Helix 21	AC3	f	33	37	Right-handed 310
Helix 22	AC4	f	56	71	Right-handed alpha
Helix 23	AC5	f	101	116	Right-handed alpha
Helix 24	AC6	f	117	120	Right-handed 310
Helix 25	AC7	f	171	183	Right-handed alpha
Helix 26	AC8	f	189	205	Right-handed alpha
Helix 27	AC9	g	3	7	Right-handed alpha
Helix 28	AD1	g	59	83	Right-handed alpha
Helix 29	AD2	g	139	154	Right-handed alpha
Helix 30	AD3	i	24	38	Right-handed alpha
Helix 31	AD4	i	58	62	Right-handed 310
Helix 32	AD5	i	67	72	Right-handed alpha
Helix 33	AD6	i	89	96	Right-handed alpha
Helix 34	AD7	i	96	109	Right-handed alpha
Helix 35	AD8	i	112	120	Right-handed alpha
Helix 36	AD9	j	103	108	Right-handed 310
Helix 37	AE1	j	111	118	Right-handed alpha
Helix 38	AE2	k	4	8	Right-handed 310
Helix 39	AE3	k	55	60	Right-handed alpha
Helix 40	AE4	k	78	86	Right-handed alpha
Helix 41	AE5	k	94	102	Right-handed alpha
Helix 42	AE6	k	129	140	Right-handed alpha
Helix 43	AE7	l	44	59	Right-handed alpha
Helix 44	AE8	l	110	123	Right-handed alpha
Helix 45	AE9	m	9	12	Right-handed 310
Helix 46	AF1	m	13	32	Right-handed alpha
Helix 47	AF2	m	37	56	Right-handed alpha
Helix 48	AF3	m	59	69	Right-handed alpha
Helix 49	AF4	m	72	82	Right-handed alpha
Helix 50	AF5	m	82	87	Right-handed alpha
Helix 51	AF6	n	12	27	Right-handed alpha
Helix 52	AF7	n	67	72	Right-handed alpha
Helix 53	AF8	n	76	96	Right-handed alpha
Helix 54	AF9	n	111	124	Right-handed alpha
Helix 55	AG1	o	3	10	Right-handed alpha
Helix 56	AG2	o	53	56	Right-handed 310
Helix 57	AG3	o	97	103	Right-handed 310
Helix 58	AG4	o	104	109	Right-handed 310
Helix 59	AG5	p	6	21	Right-handed alpha
Helix 60	AG6	p	25	30	Right-handed 310
Helix 61	AG7	p	31	71	Right-handed alpha
Helix 62	AG8	p	75	87	Right-handed alpha
Helix 63	AG9	p	93	101	Right-handed alpha
Helix 64	AH1	p	102	117	Right-handed alpha
Helix 65	AH2	q	49	56	Right-handed alpha
Helix 66	AH3	r	8	14	Right-handed alpha
Helix 67	AH4	r	30	42	Right-handed alpha
Helix 68	AH5	r	45	54	Right-handed alpha
Helix 69	AH6	r	60	79	Right-handed alpha
Helix 70	AH7	r	82	84	Right-handed 310
Helix 71	AH8	r	106	108	Right-handed 310
Helix 72	AH9	r	128	132	Right-handed 310
Helix 73	AI1	s	8	11	Right-handed 310
Helix 74	AI2	s	19	26	Right-handed alpha
Helix 75	AI3	s	40	53	Right-handed alpha
Helix 76	AI4	u	16	26	Right-handed alpha
Helix 77	AI5	u	47	55	Right-handed alpha
Helix 78	AI6	w	51	57	Right-handed alpha
Helix 79	AI7	x	6	12	Right-handed 310
Helix 80	AI8	x	13	38	Right-handed alpha
Helix 81	AI9	x	44	65	Right-handed alpha
Helix 82	AJ1	y	17	28	Right-handed alpha
Helix 83	AJ2	y	41	51	Right-handed alpha
Helix 84	AJ3	z	9	18	Right-handed alpha
Helix 85	AJ4	1	8	17	Right-handed alpha
Helix 86	AJ5	1	17	24	Right-handed alpha
Helix 87	AJ6	1	24	38	Right-handed alpha
Helix 88	AJ7	2	7	13	Right-handed alpha
Helix 89	AJ8	2	37	45	Right-handed alpha
Helix 90	AJ9	2	51	62	Right-handed alpha
Helix 91	AK1	4	56	66	Right-handed alpha
Helix 92	AK2	V	3	11	Right-handed alpha
Helix 93	AK3	V	12	14	Right-handed 310
Helix 94	AK4	3	29	32	Right-handed 310

There are 48 sheets in PDB entry 8CVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	3	5	first strand
Strand 2	c	17	19	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	34	36	first strand
Strand 2	c	61	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	102	106	first strand
Strand 2	c	91	97	anti-parallel
Strand 3	c	77	84	anti-parallel
Strand 4	c	116	117	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	130	132	first strand
Strand 2	c	190	193	anti-parallel
Strand 3	c	141	143	anti-parallel
Strand 4	c	163	167	anti-parallel
Strand 5	c	172	176	anti-parallel
Strand 6	c	182	186	anti-parallel
Strand 7	c	267	269	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	145	146	first strand
Strand 2	c	153	155	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	9	21	first strand
Strand 2	d	27	33	anti-parallel
Strand 3	d	192	196	anti-parallel
Strand 4	d	175	187	anti-parallel
Strand 5	d	112	118	anti-parallel
Strand 6	d	206	211	anti-parallel
Strand 7	d	9	21	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	86	88	first strand
Strand 2	d	53	56	anti-parallel
Strand 3	d	38	44	anti-parallel
Strand 4	d	101	102	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	123	125	first strand
Strand 2	d	169	171	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	7	10	first strand
Strand 2	e	19	22	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	126	129	first strand
Strand 2	e	195	199	parallel
Strand 3	e	154	157	parallel
Strand 4	e	177	180	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	75	78	first strand
Strand 2	f	93	100	anti-parallel
Strand 3	f	40	48	anti-parallel
Strand 4	f	161	167	anti-parallel
Strand 5	f	137	141	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	9	10	first strand
Strand 2	g	50	54	anti-parallel
Strand 3	g	42	44	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	16	20	first strand
Strand 2	g	23	27	anti-parallel
Strand 3	g	32	36	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	123	129	first strand
Strand 2	g	132	137	anti-parallel
Strand 3	g	84	91	anti-parallel
Strand 4	g	163	166	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	95	99	first strand
Strand 2	g	104	109	anti-parallel
Strand 3	g	115	118	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	122	124	first strand
Strand 2	i	53	57	parallel
Strand 3	i	15	19	parallel
Strand 4	i	138	139	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	73	77	first strand
Strand 2	i	84	88	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	7	10	first strand
Strand 2	j	16	24	anti-parallel
Strand 3	j	38	46	anti-parallel
Strand 4	j	57	63	anti-parallel
Strand 5	j	83	86	anti-parallel
Strand 6	j	7	10	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	69	70	first strand
Strand 2	j	76	79	anti-parallel
Strand 3	o	68	75	anti-parallel
Strand 4	o	58	65	anti-parallel
Strand 5	o	37	51	anti-parallel
Strand 6	o	25	34	anti-parallel
Strand 7	o	81	86	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	101	102	first strand
Strand 2	j	120	121	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	63	66	first strand
Strand 2	l	102	107	anti-parallel
Strand 3	l	32	36	anti-parallel
Strand 4	l	129	133	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	40	43	first strand
Strand 2	l	89	97	anti-parallel
Strand 3	l	72	76	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	33	35	first strand
Strand 2	m	109	115	anti-parallel
Strand 3	m	95	102	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	58	64	first strand
Strand 2	n	47	53	anti-parallel
Strand 3	n	37	42	anti-parallel
Strand 4	n	101	103	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	11	14	first strand
Strand 2	q	2	6	anti-parallel
Strand 3	q	32	41	anti-parallel
Strand 4	q	57	66	anti-parallel
Strand 5	q	92	101	anti-parallel
Strand 6	q	19	23	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	11	14	first strand
Strand 2	q	2	6	anti-parallel
Strand 3	q	32	41	anti-parallel
Strand 4	q	46	47	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	71	77	first strand
Strand 2	q	82	88	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	20	27	first strand
Strand 2	r	118	126	anti-parallel
Strand 3	r	86	95	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	99	104	first strand
Strand 2	r	110	115	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	13	16	first strand
Strand 2	s	30	35	anti-parallel
Strand 3	s	81	88	anti-parallel
Strand 4	s	56	64	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	68	71	first strand
Strand 2	s	74	77	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	70	71	first strand
Strand 2	t	35	38	anti-parallel
Strand 3	t	23	30	anti-parallel
Strand 4	t	11	14	anti-parallel
Strand 5	t	75	80	anti-parallel
Strand 6	t	85	87	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	43	45	first strand
Strand 2	t	65	67	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	90	100	first strand
Strand 2	t	106	116	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	4	11	first strand
Strand 2	u	41	46	anti-parallel
Strand 3	u	28	34	anti-parallel
Strand 4	u	87	94	parallel
Strand 5	u	71	80	anti-parallel
Strand 6	u	60	64	anti-parallel
Strand 7	u	4	11	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	138	141	first strand
Strand 2	u	100	109	parallel
Strand 3	u	125	131	anti-parallel
Strand 4	u	164	165	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	118	121	first strand
Strand 2	u	172	177	anti-parallel
Strand 3	u	151	153	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	22	23	first strand
Strand 2	v	36	39	anti-parallel
Strand 3	v	59	61	anti-parallel
Strand 4	v	51	53	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	30	31	first strand
Strand 2	v	65	72	anti-parallel
Strand 3	v	75	81	anti-parallel
Strand 4	v	46	47	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	w	13	17	first strand
Strand 2	w	25	29	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	w	33	40	first strand
Strand 2	w	43	50	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	35	38	first strand
Strand 2	y	5	9	anti-parallel
Strand 3	y	55	58	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	z	28	29	first strand
Strand 2	z	38	39	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	z	50	51	first strand
Strand 2	z	58	59	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	24	27	first strand
Strand 2	11	16	anti-parallel
Strand 3	48	54	anti-parallel
Strand 4	38	43	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	14	16	first strand
Strand 2	2	22	25	anti-parallel
Strand 3	2	47	49	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	21	23	first strand
Strand 2	4	13	15	anti-parallel
Strand 3	4	33	34	parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	2	3	first strand
Strand 2	3	34	35	parallel
Strand 3	3	22	26	anti-parallel
Strand 4	3	15	19	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CVM