Analysis of interatomic Contacts of Structural Units in PDB entry:
8CVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CVN entry

There are 2 chains in PDB entry 8CVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1TYR 256
B
 HIS 1TYR 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8CVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
38 51Right-handed alpha
Helix 3
AA3
A
54 56Right-handed 310
Helix 4
AA4
A
67 83Right-handed alpha
Helix 5
AA5
A
99 108Right-handed alpha
Helix 6
AA6
A
108 123Right-handed alpha
Helix 7
AA7
A
124 127Right-handed 310
Helix 8
AA8
A
138 142Right-handed 310
Helix 9
AA9
A
148 173Right-handed alpha
Helix 10
AB1
A
188 195Right-handed 310
Helix 11
AB2
A
196 201Right-handed alpha
Helix 12
AB3
A
202 205Right-handed 310
Helix 13
AB4
A
206 218Right-handed alpha
Helix 14
AB5
A
221 235Right-handed alpha
Helix 15
AB6
B
16 29Right-handed alpha
Helix 16
AB7
B
38 51Right-handed alpha
Helix 17
AB8
B
54 56Right-handed 310
Helix 18
AB9
B
67 83Right-handed alpha
Helix 19
AC1
B
99 108Right-handed alpha
Helix 20
AC2
B
108 123Right-handed alpha
Helix 21
AC3
B
124 127Right-handed 310
Helix 22
AC4
B
138 142Right-handed 310
Helix 23
AC5
B
148 173Right-handed alpha
Helix 24
AC6
B
188 195Right-handed 310
Helix 25
AC7
B
196 201Right-handed alpha
Helix 26
AC8
B
202 205Right-handed 310
Helix 27
AC9
B
206 218Right-handed alpha
Helix 28
AD1
B
221 235Right-handed alpha
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There are 2 sheets in PDB entry 8CVN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
31 36parallel
Strand 3
A
7 11parallel
Strand 4
A
87 90parallel
Strand 5
A
131 136parallel
Strand 6
A
176 183parallel
Strand 7
A
242 245parallel
Strand 8
A
251 253anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
31 36parallel
Strand 3
B
7 11parallel
Strand 4
B
87 90parallel
Strand 5
B
131 136parallel
Strand 6
B
176 183parallel
Strand 7
B
242 245parallel
Strand 8
B
251 253anti-parallel
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