Analysis of interatomic Contacts of Structural Units in PDB entry:
8CVO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CVO entry

There are 10 chains in PDB entry 8CVO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 906	U 949
A	A 952	U 1380
E	ASN 32	PHE 95
G	GLY 2	ALA 215
I	PRO 2	TRP 156
J	LYS 40	ARG 173
M	LYS 5	LEU 102
N	ALA 2	LYS 123
S	ALA 2	TRP 61
U	PRO 2	LYS 85

There are 37 helices in PDB entry 8CVO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	78	92	Right-handed alpha
Helix 2	AA2	G	6	11	Right-handed alpha
Helix 3	AA3	G	27	46	Right-handed alpha
Helix 4	AA4	G	72	77	Right-handed alpha
Helix 5	AA5	G	80	95	Right-handed alpha
Helix 6	AA6	G	111	125	Right-handed alpha
Helix 7	AA7	G	128	144	Right-handed alpha
Helix 8	AA8	G	155	159	Right-handed 310
Helix 9	AA9	G	208	215	Right-handed alpha
Helix 10	AB1	I	20	31	Right-handed alpha
Helix 11	AB2	I	32	34	Right-handed 310
Helix 12	AB3	I	35	54	Right-handed alpha
Helix 13	AB4	I	57	70	Right-handed alpha
Helix 14	AB5	I	92	111	Right-handed alpha
Helix 15	AB6	I	115	130	Right-handed alpha
Helix 16	AB7	I	132	148	Right-handed alpha
Helix 17	AB8	I	149	155	Right-handed 310
Helix 18	AB9	J	76	81	Right-handed alpha
Helix 19	AC1	J	87	97	Right-handed alpha
Helix 20	AC2	J	113	133	Right-handed alpha
Helix 21	AC3	J	137	144	Right-handed alpha
Helix 22	AC4	M	14	32	Right-handed alpha
Helix 23	AC5	M	80	90	Right-handed alpha
Helix 24	AC6	N	14	19	Right-handed alpha
Helix 25	AC7	N	26	38	Right-handed alpha
Helix 26	AC8	N	49	64	Right-handed alpha
Helix 27	AC9	N	67	85	Right-handed alpha
Helix 28	AD1	N	86	95	Right-handed alpha
Helix 29	AD2	N	107	112	Right-handed alpha
Helix 30	AD3	S	3	12	Right-handed alpha
Helix 31	AD4	S	16	20	Right-handed 310
Helix 32	AD5	S	40	51	Right-handed alpha
Helix 33	AD6	U	4	8	Right-handed 310
Helix 34	AD7	U	14	26	Right-handed alpha
Helix 35	AD8	U	41	45	Right-handed 310
Helix 36	AD9	U	63	69	Right-handed 310
Helix 37	AE1	U	70	75	Right-handed 310

There are 8 sheets in PDB entry 8CVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	47	first strand
Strand 2	E	52	63	anti-parallel
Strand 3	E	69	76	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	21	first strand
Strand 2	G	51	58	parallel
Strand 3	G	62	69	anti-parallel
Strand 4	G	97	103	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	170	first strand
Strand 2	G	147	154	anti-parallel
Strand 3	G	194	205	anti-parallel
Strand 4	G	179	189	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	73	78	first strand
Strand 2	I	85	90	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	53	first strand
Strand 2	J	58	65	anti-parallel
Strand 3	J	103	110	anti-parallel
Strand 4	J	70	72	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	36	52	first strand
Strand 2	M	62	76	anti-parallel
Strand 3	M	7	12	anti-parallel
Strand 4	M	97	101	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	36	52	first strand
Strand 2	M	62	76	anti-parallel
Strand 3	S	56	58	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	30	33	first strand
Strand 2	U	48	52	parallel
Strand 3	U	57	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CVO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CVO