Analysis of interatomic Contacts of Structural Units in PDB entry:
8CVZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CVZ entry

There are 10 chains in PDB entry 8CVZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	MET 1	LEU 266
B	PHE 22	ASN 626
C	PHE 22	ASN 626
D	PHE 22	GLU 627
A	PHE 22	ASN 626
E	VAL 316	GLN 350
I	PRO 0	LEU 266
F	VAL 316	GLN 350
G	VAL 316	LEU 349
H	VAL 316	LEU 349

There are133 helices in PDB entry 8CVZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	13	29	Right-handed alpha
Helix 2	AA2	J	44	53	Right-handed alpha
Helix 3	AA3	J	70	77	Right-handed alpha
Helix 4	AA4	J	80	87	Right-handed alpha
Helix 5	AA5	J	88	92	Right-handed 310
Helix 6	AA6	J	111	117	Right-handed 310
Helix 7	AA7	J	142	156	Right-handed alpha
Helix 8	AA8	J	162	171	Right-handed alpha
Helix 9	AA9	J	172	176	Right-handed 310
Helix 10	AB1	J	184	188	Right-handed 310
Helix 11	AB2	J	191	197	Right-handed alpha
Helix 12	AB3	J	197	205	Right-handed alpha
Helix 13	AB4	J	243	257	Right-handed alpha
Helix 14	AB5	J	257	263	Right-handed alpha
Helix 15	AB6	B	42	59	Right-handed alpha
Helix 16	AB7	B	69	76	Right-handed alpha
Helix 17	AB8	B	84	97	Right-handed alpha
Helix 18	AB9	B	128	138	Right-handed alpha
Helix 19	AC1	B	145	169	Right-handed alpha
Helix 20	AC2	B	184	194	Right-handed alpha
Helix 21	AC3	B	207	217	Right-handed alpha
Helix 22	AC4	B	228	236	Right-handed alpha
Helix 23	AC5	B	238	252	Right-handed alpha
Helix 24	AC6	B	259	270	Right-handed alpha
Helix 25	AC7	B	294	312	Right-handed alpha
Helix 26	AC8	B	338	356	Right-handed alpha
Helix 27	AC9	B	376	411	Right-handed alpha
Helix 28	AD1	B	415	420	Right-handed alpha
Helix 29	AD2	B	421	436	Right-handed alpha
Helix 30	AD3	B	454	464	Right-handed alpha
Helix 31	AD4	B	492	500	Right-handed alpha
Helix 32	AD5	B	513	523	Right-handed alpha
Helix 33	AD6	B	532	542	Right-handed alpha
Helix 34	AD7	B	559	576	Right-handed alpha
Helix 35	AD8	B	578	590	Right-handed alpha
Helix 36	AD9	B	592	597	Right-handed alpha
Helix 37	AE1	B	597	616	Right-handed alpha
Helix 38	AE2	C	42	59	Right-handed alpha
Helix 39	AE3	C	69	76	Right-handed alpha
Helix 40	AE4	C	84	97	Right-handed alpha
Helix 41	AE5	C	121	138	Right-handed alpha
Helix 42	AE6	C	145	168	Right-handed alpha
Helix 43	AE7	C	181	194	Right-handed alpha
Helix 44	AE8	C	207	217	Right-handed alpha
Helix 45	AE9	C	228	236	Right-handed alpha
Helix 46	AF1	C	238	252	Right-handed alpha
Helix 47	AF2	C	259	269	Right-handed alpha
Helix 48	AF3	C	295	313	Right-handed alpha
Helix 49	AF4	C	338	356	Right-handed alpha
Helix 50	AF5	C	376	411	Right-handed alpha
Helix 51	AF6	C	421	435	Right-handed alpha
Helix 52	AF7	C	454	464	Right-handed alpha
Helix 53	AF8	C	492	500	Right-handed alpha
Helix 54	AF9	C	513	522	Right-handed alpha
Helix 55	AG1	C	532	542	Right-handed alpha
Helix 56	AG2	C	559	576	Right-handed alpha
Helix 57	AG3	C	578	590	Right-handed alpha
Helix 58	AG4	C	591	592	Right-handed 310
Helix 59	AG5	C	593	596	Right-handed 310
Helix 60	AG6	C	597	617	Right-handed alpha
Helix 61	AG7	D	42	59	Right-handed alpha
Helix 62	AG8	D	69	77	Right-handed alpha
Helix 63	AG9	D	84	97	Right-handed alpha
Helix 64	AH1	D	120	124	Right-handed 310
Helix 65	AH2	D	125	138	Right-handed alpha
Helix 66	AH3	D	145	169	Right-handed alpha
Helix 67	AH4	D	181	183	Right-handed 310
Helix 68	AH5	D	184	195	Right-handed alpha
Helix 69	AH6	D	207	217	Right-handed alpha
Helix 70	AH7	D	228	236	Right-handed alpha
Helix 71	AH8	D	238	252	Right-handed alpha
Helix 72	AH9	D	259	269	Right-handed alpha
Helix 73	AI1	D	294	313	Right-handed alpha
Helix 74	AI2	D	338	356	Right-handed alpha
Helix 75	AI3	D	376	411	Right-handed alpha
Helix 76	AI4	D	415	420	Right-handed alpha
Helix 77	AI5	D	423	436	Right-handed alpha
Helix 78	AI6	D	454	464	Right-handed alpha
Helix 79	AI7	D	492	498	Right-handed alpha
Helix 80	AI8	D	513	522	Right-handed alpha
Helix 81	AI9	D	532	542	Right-handed alpha
Helix 82	AJ1	D	545	549	Right-handed 310
Helix 83	AJ2	D	559	576	Right-handed alpha
Helix 84	AJ3	D	578	592	Right-handed alpha
Helix 85	AJ4	D	592	597	Right-handed alpha
Helix 86	AJ5	D	597	616	Right-handed alpha
Helix 87	AJ6	A	42	59	Right-handed alpha
Helix 88	AJ7	A	69	76	Right-handed alpha
Helix 89	AJ8	A	84	97	Right-handed alpha
Helix 90	AJ9	A	128	138	Right-handed alpha
Helix 91	AK1	A	146	169	Right-handed alpha
Helix 92	AK2	A	184	194	Right-handed alpha
Helix 93	AK3	A	207	217	Right-handed alpha
Helix 94	AK4	A	228	236	Right-handed alpha
Helix 95	AK5	A	238	252	Right-handed alpha
Helix 96	AK6	A	259	270	Right-handed alpha
Helix 97	AK7	A	294	312	Right-handed alpha
Helix 98	AK8	A	338	356	Right-handed alpha
Helix 99	AK9	A	376	411	Right-handed alpha
Helix 100	AL1	A	415	420	Right-handed alpha
Helix 101	AL2	A	421	435	Right-handed alpha
Helix 102	AL3	A	454	464	Right-handed alpha
Helix 103	AL4	A	492	500	Right-handed alpha
Helix 104	AL5	A	513	523	Right-handed alpha
Helix 105	AL6	A	532	542	Right-handed alpha
Helix 106	AL7	A	559	576	Right-handed alpha
Helix 107	AL8	A	578	590	Right-handed alpha
Helix 108	AL9	A	592	597	Right-handed alpha
Helix 109	AM1	A	597	616	Right-handed alpha
Helix 110	AM2	E	318	327	Right-handed alpha
Helix 111	AM3	E	337	347	Right-handed alpha
Helix 112	AM4	I	13	29	Right-handed alpha
Helix 113	AM5	I	46	55	Right-handed alpha
Helix 114	AM6	I	70	77	Right-handed alpha
Helix 115	AM7	I	80	88	Right-handed alpha
Helix 116	AM8	I	89	92	Right-handed 310
Helix 117	AM9	I	111	117	Right-handed 310
Helix 118	AN1	I	142	156	Right-handed alpha
Helix 119	AN2	I	162	171	Right-handed alpha
Helix 120	AN3	I	172	176	Right-handed 310
Helix 121	AN4	I	184	188	Right-handed 310
Helix 122	AN5	I	191	197	Right-handed alpha
Helix 123	AN6	I	197	205	Right-handed alpha
Helix 124	AN7	I	218	222	Right-handed 310
Helix 125	AN8	I	238	242	Right-handed 310
Helix 126	AN9	I	246	257	Right-handed alpha
Helix 127	AO1	I	257	264	Right-handed alpha
Helix 128	AO2	F	318	327	Right-handed alpha
Helix 129	AO3	F	337	347	Right-handed alpha
Helix 130	AO4	G	318	327	Right-handed alpha
Helix 131	AO5	G	337	347	Right-handed alpha
Helix 132	AO6	H	318	327	Right-handed alpha
Helix 133	AO7	H	337	348	Right-handed alpha

There are 21 sheets in PDB entry 8CVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	60	first strand
Strand 2	J	34	39	parallel
Strand 3	J	4	10	parallel
Strand 4	J	97	101	parallel
Strand 5	J	132	139	anti-parallel
Strand 6	J	121	124	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	105	107	first strand
Strand 2	J	210	212	anti-parallel
Strand 3	J	189	190	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	224	225	first strand
Strand 2	J	230	231	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	102	106	anti-parallel
Strand 3	B	113	117	anti-parallel
Strand 4	B	62	67	parallel
Strand 5	B	29	32	parallel
Strand 6	B	176	179	parallel
Strand 7	B	199	204	parallel
Strand 8	B	254	257	parallel
Strand 9	B	276	277	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	477	first strand
Strand 2	B	362	366	parallel
Strand 3	B	324	328	parallel
Strand 4	B	502	504	parallel
Strand 5	B	526	529	parallel
Strand 6	B	552	553	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	446	447	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	175	178	parallel
Strand 3	C	198	201	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	67	first strand
Strand 2	C	113	117	parallel
Strand 3	C	101	106	anti-parallel
Strand 4	C	77	79	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	257	first strand
Strand 2	C	276	277	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	475	first strand
Strand 2	C	361	364	parallel
Strand 3	C	323	327	parallel
Strand 4	C	502	504	parallel
Strand 5	C	526	527	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	375	first strand
Strand 2	C	446	448	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	27	30	parallel
Strand 3	D	174	178	parallel
Strand 4	D	198	204	parallel
Strand 5	D	254	257	parallel
Strand 6	D	276	277	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	113	117	parallel
Strand 3	D	101	105	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	478	first strand
Strand 2	D	362	367	parallel
Strand 3	D	324	329	parallel
Strand 4	D	502	505	parallel
Strand 5	D	526	529	parallel
Strand 6	D	552	553	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	375	first strand
Strand 2	D	446	448	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	102	106	anti-parallel
Strand 3	A	113	117	anti-parallel
Strand 4	A	62	67	parallel
Strand 5	A	29	32	parallel
Strand 6	A	176	179	parallel
Strand 7	A	199	204	parallel
Strand 8	A	254	257	parallel
Strand 9	A	276	277	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	477	first strand
Strand 2	A	362	367	parallel
Strand 3	A	324	329	parallel
Strand 4	A	502	504	parallel
Strand 5	A	526	529	parallel
Strand 6	A	552	553	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	446	448	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	33	39	parallel
Strand 3	I	1	10	parallel
Strand 4	I	97	101	parallel
Strand 5	I	132	139	anti-parallel
Strand 6	I	121	124	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	105	107	first strand
Strand 2	I	210	212	anti-parallel
Strand 3	I	189	190	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	224	225	first strand
Strand 2	I	230	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CVZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CVZ