Analysis of interatomic Contacts of Structural Units in PDB entry:
8CW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CW9 entry

There are 6 chains in PDB entry 8CW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	PHE 464
B	VAL 3	VAL 109
C	VAL 2	VAL 111
D	GLU 3	LEU 107
E	LEU 19	PHE 464
F	LEU 19	ALA 161

There are 58 helices in PDB entry 8CW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	84	Right-handed alpha
Helix 2	AA2	A	104	129	Right-handed alpha
Helix 3	AA3	A	130	141	Right-handed alpha
Helix 4	AA4	A	163	171	Right-handed alpha
Helix 5	AA5	A	171	177	Right-handed alpha
Helix 6	AA6	A	178	181	Right-handed 310
Helix 7	AA7	A	186	210	Right-handed alpha
Helix 8	AA8	A	223	234	Right-handed alpha
Helix 9	AA9	A	237	247	Right-handed alpha
Helix 10	AB1	A	247	255	Right-handed alpha
Helix 11	AB2	A	344	347	Right-handed 310
Helix 12	AB3	A	348	354	Right-handed alpha
Helix 13	AB4	A	441	446	Right-handed alpha
Helix 14	AB5	A	461	463	Right-handed 310
Helix 15	AB6	B	81	85	Right-handed 310
Helix 16	AB7	C	83	87	Right-handed 310
Helix 17	AB8	D	79	83	Right-handed 310
Helix 18	AB9	E	65	84	Right-handed alpha
Helix 19	AC1	E	104	129	Right-handed alpha
Helix 20	AC2	E	130	141	Right-handed alpha
Helix 21	AC3	E	163	171	Right-handed alpha
Helix 22	AC4	E	171	177	Right-handed alpha
Helix 23	AC5	E	187	197	Right-handed alpha
Helix 24	AC6	E	197	209	Right-handed alpha
Helix 25	AC7	E	223	234	Right-handed alpha
Helix 26	AC8	E	237	247	Right-handed alpha
Helix 27	AC9	E	247	255	Right-handed alpha
Helix 28	AD1	E	344	347	Right-handed 310
Helix 29	AD2	E	348	354	Right-handed alpha
Helix 30	AD3	E	441	446	Right-handed alpha
Helix 31	AD4	E	461	463	Right-handed 310
Helix 32	AD5	F	65	84	Right-handed alpha
Helix 33	AD6	F	104	129	Right-handed alpha
Helix 34	AD7	F	130	144	Right-handed alpha
Helix 35	AD8	F	163	172	Right-handed alpha
Helix 36	AD9	F	172	177	Right-handed alpha
Helix 37	AE1	F	178	181	Right-handed 310
Helix 38	AE2	F	187	210	Right-handed alpha
Helix 39	AE3	F	223	234	Right-handed alpha
Helix 40	AE4	F	237	246	Right-handed alpha
Helix 41	AE5	F	247	255	Right-handed alpha
Helix 42	AE6	F	344	347	Right-handed 310
Helix 43	AE7	F	348	354	Right-handed alpha
Helix 44	AE8	F	441	446	Right-handed alpha
Helix 45	AE9	F	461	463	Right-handed 310
Helix 46	AF1	G	28	32	Right-handed 310
Helix 47	AF2	G	87	91	Right-handed 310
Helix 48	AF3	H	83	87	Right-handed 310
Helix 49	AF4	I	61	64	Right-handed 310
Helix 50	AF5	I	83	87	Right-handed 310
Helix 51	AF6	J	28	32	Right-handed 310
Helix 52	AF7	J	87	91	Right-handed 310
Helix 53	AF8	K	79	83	Right-handed 310
Helix 54	AF9	L	79	83	Right-handed 310
Helix 55	AG1	M	81	85	Right-handed 310
Helix 56	AG2	N	28	32	Right-handed 310
Helix 57	AG3	N	87	91	Right-handed 310
Helix 58	AG4	O	81	85	Right-handed 310

There are 54 sheets in PDB entry 8CW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	29	40	anti-parallel
Strand 3	A	283	288	anti-parallel
Strand 4	A	308	313	anti-parallel
Strand 5	A	316	320	anti-parallel
Strand 6	A	341	342	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	332	336	anti-parallel
Strand 3	A	29	40	parallel
Strand 4	A	20	24	anti-parallel
Strand 5	A	433	437	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	42	51	parallel
Strand 4	A	266	275	anti-parallel
Strand 5	A	256	263	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	293	first strand
Strand 2	A	300	304	anti-parallel
Strand 3	A	362	366	anti-parallel
Strand 4	A	455	459	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	376	first strand
Strand 2	A	379	384	anti-parallel
Strand 3	A	406	411	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	390	394	anti-parallel
Strand 3	A	417	420	anti-parallel
Strand 4	A	423	426	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	105	108	parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	36	40	anti-parallel
Strand 5	B	47	50	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	105	108	parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	98	101	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	64	69	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	71	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	88	96	anti-parallel
Strand 5	C	102	103	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	88	96	anti-parallel
Strand 5	C	107	109	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	91	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	48	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	91	anti-parallel
Strand 4	D	96	98	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	279	first strand
Strand 2	E	29	40	anti-parallel
Strand 3	E	283	288	anti-parallel
Strand 4	E	308	312	anti-parallel
Strand 5	E	317	320	anti-parallel
Strand 6	E	341	343	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	327	329	first strand
Strand 2	E	332	336	anti-parallel
Strand 3	E	29	40	parallel
Strand 4	E	20	24	anti-parallel
Strand 5	E	433	437	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	150	first strand
Strand 2	E	156	162	anti-parallel
Strand 3	E	42	51	parallel
Strand 4	E	266	275	anti-parallel
Strand 5	E	256	263	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	293	first strand
Strand 2	E	300	304	anti-parallel
Strand 3	E	362	366	anti-parallel
Strand 4	E	455	459	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	372	376	first strand
Strand 2	E	379	384	anti-parallel
Strand 3	E	406	411	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	398	402	first strand
Strand 2	E	390	394	anti-parallel
Strand 3	E	417	420	anti-parallel
Strand 4	E	423	426	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	279	first strand
Strand 2	F	29	40	anti-parallel
Strand 3	F	283	288	anti-parallel
Strand 4	F	308	313	anti-parallel
Strand 5	F	316	320	anti-parallel
Strand 6	F	341	342	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	328	329	first strand
Strand 2	F	332	336	anti-parallel
Strand 3	F	29	40	parallel
Strand 4	F	20	24	anti-parallel
Strand 5	F	433	437	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	150	first strand
Strand 2	F	156	162	anti-parallel
Strand 3	F	42	50	parallel
Strand 4	F	266	275	anti-parallel
Strand 5	F	256	263	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	293	first strand
Strand 2	F	300	304	anti-parallel
Strand 3	F	362	366	anti-parallel
Strand 4	F	455	459	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	372	375	first strand
Strand 2	F	379	384	anti-parallel
Strand 3	F	406	411	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	398	402	first strand
Strand 2	F	390	394	anti-parallel
Strand 3	F	417	420	anti-parallel
Strand 4	F	423	426	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	118	121	parallel
Strand 3	G	92	100	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	118	121	parallel
Strand 3	G	92	100	anti-parallel
Strand 4	G	110	114	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	96	anti-parallel
Strand 5	H	102	103	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	96	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	6	first strand
Strand 2	I	18	23	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	71	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	88	96	anti-parallel
Strand 5	I	102	103	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	88	96	anti-parallel
Strand 5	I	107	109	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	60	first strand
Strand 2	J	45	51	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	92	100	anti-parallel
Strand 5	J	110	114	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	60	first strand
Strand 2	J	45	51	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	92	100	anti-parallel
Strand 5	J	118	120	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	6	first strand
Strand 2	K	19	24	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	13	first strand
Strand 2	K	103	106	parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	48	first strand
Strand 2	K	34	38	anti-parallel
Strand 3	K	85	91	anti-parallel
Strand 4	K	96	98	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	17	24	anti-parallel
Strand 3	L	70	78	anti-parallel
Strand 4	L	62	64	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	96	98	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	11	first strand
Strand 2	M	105	108	parallel
Strand 3	M	87	94	anti-parallel
Strand 4	M	36	40	anti-parallel
Strand 5	M	47	50	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	11	first strand
Strand 2	M	105	108	parallel
Strand 3	M	87	94	anti-parallel
Strand 4	M	98	101	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	23	first strand
Strand 2	M	72	77	anti-parallel
Strand 3	M	64	68	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	33	39	anti-parallel
Strand 4	N	92	100	anti-parallel
Strand 5	N	110	114	anti-parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	33	39	anti-parallel
Strand 4	N	92	100	anti-parallel
Strand 5	N	118	120	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	9	11	first strand
Strand 2	O	105	108	parallel
Strand 3	O	87	94	anti-parallel
Strand 4	O	36	40	anti-parallel
Strand 5	O	47	50	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	9	11	first strand
Strand 2	O	105	108	parallel
Strand 3	O	87	94	anti-parallel
Strand 4	O	98	101	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	18	22	first strand
Strand 2	O	73	77	anti-parallel
Strand 3	O	64	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CW9