Analysis of interatomic Contacts of Structural Units in PDB entry:
8CWJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CWJ entry

There are 7 chains in PDB entry 8CWJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	LYS 220
L	ASP 1	CYS 220
G	THR 333	GLY 529
A	GLN 1	CYS 222
B	ASP 1	GLY 218
I	THR 333	GLY 529
J	GLU 1	ARG 38

There are 37 helices in PDB entry 8CWJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	32	Right-handed 310
Helix 2	AA2	H	87	91	Right-handed 310
Helix 3	AA3	H	207	210	Right-handed 310
Helix 4	AA4	L	85	89	Right-handed 310
Helix 5	AA5	L	127	134	Right-handed alpha
Helix 6	AA6	L	189	194	Right-handed alpha
Helix 7	AA7	G	337	343	Right-handed alpha
Helix 8	AA8	G	365	370	Right-handed alpha
Helix 9	AA9	G	383	389	Right-handed 310
Helix 10	AB1	G	405	410	Right-handed 310
Helix 11	AB2	G	416	422	Right-handed alpha
Helix 12	AB3	G	438	443	Right-handed alpha
Helix 13	AB4	G	502	505	Right-handed 310
Helix 14	AB5	A	28	32	Right-handed 310
Helix 15	AB6	A	74	76	Right-handed 310
Helix 16	AB7	A	87	91	Right-handed 310
Helix 17	AB8	A	207	210	Right-handed 310
Helix 18	AB9	B	85	89	Right-handed 310
Helix 19	AC1	B	127	132	Right-handed alpha
Helix 20	AC2	I	337	343	Right-handed alpha
Helix 21	AC3	I	365	370	Right-handed alpha
Helix 22	AC4	I	383	389	Right-handed 310
Helix 23	AC5	I	405	410	Right-handed 310
Helix 24	AC6	I	416	422	Right-handed alpha
Helix 25	AC7	I	438	443	Right-handed alpha
Helix 26	AC8	I	502	505	Right-handed 310
Helix 27	AC9	J	87	91	Right-handed 310
Helix 28	AD1	J	162	164	Right-handed 310
Helix 29	AD2	J	193	198	Right-handed alpha
Helix 30	AD3	K	79	83	Right-handed 310
Helix 31	AD4	K	121	128	Right-handed alpha
Helix 32	AD5	K	183	189	Right-handed alpha
Helix 33	AD6	U	87	91	Right-handed 310
Helix 34	AD7	U	207	210	Right-handed 310
Helix 35	AD8	V	79	83	Right-handed 310
Helix 36	AD9	V	121	127	Right-handed alpha
Helix 37	AE1	V	183	189	Right-handed alpha

There are 53 sheets in PDB entry 8CWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	6	first strand
Strand 2	H	18	26	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	108	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	144	151	anti-parallel
Strand 3	H	182	188	anti-parallel
Strand 4	H	169	171	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	144	151	anti-parallel
Strand 3	H	182	188	anti-parallel
Strand 4	H	175	176	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	160	first strand
Strand 2	H	201	206	anti-parallel
Strand 3	H	211	216	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	76	81	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	108	112	parallel
Strand 3	L	90	96	anti-parallel
Strand 4	L	39	44	anti-parallel
Strand 5	L	51	55	anti-parallel
Strand 6	L	59	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	108	112	parallel
Strand 3	L	90	96	anti-parallel
Strand 4	L	103	104	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	36	37	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	124	first strand
Strand 2	L	135	145	anti-parallel
Strand 3	L	179	188	anti-parallel
Strand 4	L	165	169	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	159	160	first strand
Strand 2	L	151	156	anti-parallel
Strand 3	L	197	203	anti-parallel
Strand 4	L	211	216	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	358	first strand
Strand 2	G	394	403	anti-parallel
Strand 3	G	507	516	anti-parallel
Strand 4	G	431	437	anti-parallel
Strand 5	G	376	380	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	361	362	first strand
Strand 2	G	524	525	parallel
Strand 3	G	391	392	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	452	454	first strand
Strand 2	G	492	494	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	473	474	first strand
Strand 2	G	488	489	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	69	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	108	109	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	182	190	anti-parallel
Strand 4	A	170	171	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	182	190	anti-parallel
Strand 4	A	175	176	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	211	216	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	76	81	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	108	112	parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	39	44	anti-parallel
Strand 5	B	51	55	anti-parallel
Strand 6	B	59	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	108	112	parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	103	104	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	36	37	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	135	145	anti-parallel
Strand 3	B	179	188	anti-parallel
Strand 4	B	165	169	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	197	203	anti-parallel
Strand 3	B	211	216	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	354	358	first strand
Strand 2	I	394	403	anti-parallel
Strand 3	I	507	516	anti-parallel
Strand 4	I	431	437	anti-parallel
Strand 5	I	376	380	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	361	362	first strand
Strand 2	I	524	525	parallel
Strand 3	I	391	392	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	452	454	first strand
Strand 2	I	492	494	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	473	474	first strand
Strand 2	I	488	489	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	113	117	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	46	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	113	117	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	106	109	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	126	130	first strand
Strand 2	J	142	151	anti-parallel
Strand 3	J	182	190	anti-parallel
Strand 4	J	169	171	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	126	130	first strand
Strand 2	J	142	151	anti-parallel
Strand 3	J	182	190	anti-parallel
Strand 4	J	175	176	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	160	first strand
Strand 2	J	201	206	anti-parallel
Strand 3	J	211	216	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	14	first strand
Strand 2	K	102	107	parallel
Strand 3	K	84	90	anti-parallel
Strand 4	K	33	38	anti-parallel
Strand 5	K	45	49	anti-parallel
Strand 6	K	53	54	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	14	first strand
Strand 2	K	102	107	parallel
Strand 3	K	84	90	anti-parallel
Strand 4	K	97	98	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	114	118	first strand
Strand 2	K	129	139	anti-parallel
Strand 3	K	173	182	anti-parallel
Strand 4	K	159	163	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	145	150	first strand
Strand 2	K	191	197	anti-parallel
Strand 3	K	205	210	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	3	7	first strand
Strand 2	U	18	25	anti-parallel
Strand 3	U	78	83	anti-parallel
Strand 4	U	68	73	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	12	first strand
Strand 2	U	113	117	parallel
Strand 3	U	92	99	anti-parallel
Strand 4	U	33	39	anti-parallel
Strand 5	U	45	51	anti-parallel
Strand 6	U	58	60	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	12	first strand
Strand 2	U	113	117	parallel
Strand 3	U	92	99	anti-parallel
Strand 4	U	106	109	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	126	130	first strand
Strand 2	U	142	151	anti-parallel
Strand 3	U	182	190	anti-parallel
Strand 4	U	169	171	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	126	130	first strand
Strand 2	U	142	151	anti-parallel
Strand 3	U	182	190	anti-parallel
Strand 4	U	175	176	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	157	160	first strand
Strand 2	U	201	206	anti-parallel
Strand 3	U	211	216	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	4	7	first strand
Strand 2	V	19	25	anti-parallel
Strand 3	V	70	75	anti-parallel
Strand 4	V	62	67	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	10	13	first strand
Strand 2	V	102	106	parallel
Strand 3	V	84	90	anti-parallel
Strand 4	V	33	38	anti-parallel
Strand 5	V	45	49	anti-parallel
Strand 6	V	53	54	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	114	118	first strand
Strand 2	V	129	139	anti-parallel
Strand 3	V	173	182	anti-parallel
Strand 4	V	159	163	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	145	150	first strand
Strand 2	V	191	197	anti-parallel
Strand 3	V	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CWJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CWJ