Analysis of interatomic Contacts of Structural Units in PDB entry:
8CWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CWP entry

There is 1 chain in PDB entry 8CWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 17LYS 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8CWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 43Right-handed alpha
Helix 2
AA2
A
73 78Right-handed alpha
Helix 3
AA3
A
89 93Right-handed 310
Helix 4
AA4
A
94 100Right-handed alpha
Helix 5
AA5
A
133 149Right-handed alpha
Helix 6
AA6
A
160 167Right-handed alpha
Helix 7
AA7
A
170 182Right-handed alpha
Helix 8
AA8
A
197 207Right-handed alpha
Helix 9
AA9
A
207 213Right-handed alpha
Helix 10
AB1
A
224 228Right-handed 310
Helix 11
AB2
A
244 249Right-handed 310
Helix 12
AB3
A
252 258Right-handed alpha
Helix 13
AB4
A
266 270Right-handed 310
Helix 14
AB5
A
285 291Right-handed alpha
Helix 15
AB6
A
313 325Right-handed alpha
Helix 16
AB7
A
334 343Right-handed alpha
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There are 5 sheets in PDB entry 8CWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
47 54anti-parallel
Strand 3
A
153 158parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
47 54anti-parallel
Strand 3
A
18 21parallel
Strand 4
A
329 332parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
113 116anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
217 221parallel
Strand 3
A
262 264parallel
Strand 4
A
296 297parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
239 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il