Analysis of interatomic Contacts of Structural Units in PDB entry:
8CX0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CX0 entry

There are 6 chains in PDB entry 8CX0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 7GLN 382
B
MET 1LYS 176
C
VAL 5ASP 157
D
ASP 2PRO 96
E
THR 7CYS 112
K
A -2 A 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8CX0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
61 64Right-handed 310
Helix 3
AA3
A
65 78Right-handed alpha
Helix 4
AA4
A
79 81Right-handed 310
Helix 5
AA5
A
97 111Right-handed alpha
Helix 6
AA6
A
128 139Right-handed alpha
Helix 7
AA7
A
153 165Right-handed alpha
Helix 8
AA8
A
177 194Right-handed alpha
Helix 9
AA9
A
198 206Right-handed alpha
Helix 10
AB1
A
257 266Right-handed alpha
Helix 11
AB2
A
267 270Right-handed 310
Helix 12
AB3
A
288 302Right-handed alpha
Helix 13
AB4
A
319 332Right-handed alpha
Helix 14
AB5
A
339 351Right-handed alpha
Helix 15
AB6
A
363 381Right-handed alpha
Helix 16
AB7
B
14 31Right-handed alpha
Helix 17
AB8
B
42 46Right-handed 310
Helix 18
AB9
B
99 108Right-handed alpha
Helix 19
AC1
B
118 125Right-handed alpha
Helix 20
AC2
B
135 139Right-handed 310
Helix 21
AC3
B
144 154Right-handed alpha
Helix 22
AC4
B
165 170Right-handed alpha
Helix 23
AC5
C
6 15Right-handed alpha
Helix 24
AC6
C
36 51Right-handed alpha
Helix 25
AC7
C
129 135Right-handed alpha
Helix 26
AC8
C
136 149Right-handed alpha
Helix 27
AC9
D
23 36Right-handed alpha
Helix 28
AD1
D
38 42Right-handed 310
Helix 29
AD2
D
56 61Right-handed alpha
Helix 30
AD3
D
63 67Right-handed 310
Helix 31
AD4
E
32 38Right-handed alpha
Helix 32
AD5
E
39 46Right-handed alpha
Helix 33
AD6
E
66 84Right-handed alpha
Helix 34
AD7
E
96 111Right-handed alpha
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There are 7 sheets in PDB entry 8CX0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
50 57first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
114 122parallel
Strand 5
A
147 151parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
231 243first strand
Strand 2
A
219 228anti-parallel
Strand 3
A
277 283anti-parallel
Strand 4
A
305 311parallel
Strand 5
A
334 337parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
39 41first strand
Strand 2
B
51 59anti-parallel
Strand 3
B
62 69anti-parallel
Strand 4
B
83 91anti-parallel
Strand 5
B
5 13anti-parallel
Strand 6
C
64 70anti-parallel
Strand 7
C
55 59anti-parallel
Strand 8
C
25 29anti-parallel
Strand 9
C
120 127anti-parallel
Strand 10
C
106 115anti-parallel
Strand 11
C
94 103anti-parallel
Strand 12
C
85 87anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
39 41first strand
Strand 2
B
51 59anti-parallel
Strand 3
B
62 69anti-parallel
Strand 4
B
83 91anti-parallel
Strand 5
B
94 97anti-parallel
Strand 6
C
94 103parallel
Strand 7
C
85 87anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
12 18first strand
Strand 2
D
3 9anti-parallel
Strand 3
D
73 76parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
45 46first strand
Strand 2
D
49 50anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
28 31first strand
Strand 2
E
19 22anti-parallel
Strand 3
E
59 61parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il