Analysis of interatomic Contacts of Structural Units in PDB entry:
8CX9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CX9 entry

There are 12 chains in PDB entry 8CX9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 2	LYS 315
A	VAL 2	LYS 315
C	THR 4	LYS 315
D	THR 4	ILE 314
E	MET 1	ARG 74
I	LYS 0	ARG 74
F	MET 1	ALA 75
G	LYS 0	ARG 74
K	MET 1	LEU 73
L	MET 1	ARG 74
H	MET 1	ARG 74
J	MET 1	ARG 74

There are 57 helices in PDB entry 8CX9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	26	31	Right-handed alpha
Helix 2	AA2	B	47	51	Right-handed 310
Helix 3	AA3	B	61	73	Right-handed alpha
Helix 4	AA4	B	79	91	Right-handed alpha
Helix 5	AA5	B	110	121	Right-handed alpha
Helix 6	AA6	B	129	140	Right-handed alpha
Helix 7	AA7	B	144	155	Right-handed alpha
Helix 8	AA8	B	164	175	Right-handed alpha
Helix 9	AA9	B	202	204	Right-handed 310
Helix 10	AB1	B	212	219	Right-handed alpha
Helix 11	AB2	A	26	31	Right-handed alpha
Helix 12	AB3	A	47	51	Right-handed 310
Helix 13	AB4	A	61	73	Right-handed alpha
Helix 14	AB5	A	79	91	Right-handed alpha
Helix 15	AB6	A	110	121	Right-handed alpha
Helix 16	AB7	A	129	140	Right-handed alpha
Helix 17	AB8	A	144	155	Right-handed alpha
Helix 18	AB9	A	164	174	Right-handed alpha
Helix 19	AC1	A	202	204	Right-handed 310
Helix 20	AC2	A	212	219	Right-handed alpha
Helix 21	AC3	C	26	31	Right-handed alpha
Helix 22	AC4	C	61	73	Right-handed alpha
Helix 23	AC5	C	79	91	Right-handed alpha
Helix 24	AC6	C	110	121	Right-handed alpha
Helix 25	AC7	C	129	140	Right-handed alpha
Helix 26	AC8	C	144	155	Right-handed alpha
Helix 27	AC9	C	164	174	Right-handed alpha
Helix 28	AD1	C	202	204	Right-handed 310
Helix 29	AD2	C	212	219	Right-handed alpha
Helix 30	AD3	D	26	32	Right-handed alpha
Helix 31	AD4	D	61	73	Right-handed alpha
Helix 32	AD5	D	79	91	Right-handed alpha
Helix 33	AD6	D	110	121	Right-handed alpha
Helix 34	AD7	D	129	140	Right-handed alpha
Helix 35	AD8	D	144	155	Right-handed alpha
Helix 36	AD9	D	164	174	Right-handed alpha
Helix 37	AE1	D	202	204	Right-handed 310
Helix 38	AE2	D	212	219	Right-handed alpha
Helix 39	AE3	E	22	34	Right-handed alpha
Helix 40	AE4	E	37	41	Right-handed 310
Helix 41	AE5	E	55	60	Right-handed 310
Helix 42	AE6	I	22	32	Right-handed alpha
Helix 43	AE7	I	55	60	Right-handed 310
Helix 44	AE8	F	22	35	Right-handed alpha
Helix 45	AE9	F	37	41	Right-handed 310
Helix 46	AF1	F	55	60	Right-handed 310
Helix 47	AF2	G	22	35	Right-handed alpha
Helix 48	AF3	G	55	60	Right-handed 310
Helix 49	AF4	K	22	35	Right-handed alpha
Helix 50	AF5	K	37	41	Right-handed 310
Helix 51	AF6	L	22	35	Right-handed alpha
Helix 52	AF7	L	37	41	Right-handed 310
Helix 53	AF8	L	55	59	Right-handed 310
Helix 54	AF9	H	22	35	Right-handed alpha
Helix 55	AG1	H	55	60	Right-handed 310
Helix 56	AG2	J	22	35	Right-handed alpha
Helix 57	AG3	J	37	41	Right-handed 310

There are 30 sheets in PDB entry 8CX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	34	36	anti-parallel
Strand 3	B	54	57	anti-parallel
Strand 4	B	4	10	parallel
Strand 5	B	16	22	anti-parallel
Strand 6	F	72	73	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	200	first strand
Strand 2	B	182	189	anti-parallel
Strand 3	B	229	238	anti-parallel
Strand 4	B	220	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	200	first strand
Strand 2	B	182	189	anti-parallel
Strand 3	B	229	238	anti-parallel
Strand 4	B	310	311	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	241	253	parallel
Strand 3	B	296	306	anti-parallel
Strand 4	B	260	264	anti-parallel
Strand 5	B	273	278	anti-parallel
Strand 6	B	282	285	anti-parallel
Strand 7	B	290	292	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	34	36	anti-parallel
Strand 3	A	54	57	anti-parallel
Strand 4	A	4	10	parallel
Strand 5	A	16	22	anti-parallel
Strand 6	E	72	73	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	200	first strand
Strand 2	A	182	189	anti-parallel
Strand 3	A	229	238	anti-parallel
Strand 4	A	220	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	200	first strand
Strand 2	A	182	189	anti-parallel
Strand 3	A	229	238	anti-parallel
Strand 4	A	309	311	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	241	253	parallel
Strand 3	A	296	306	anti-parallel
Strand 4	A	260	264	anti-parallel
Strand 5	A	273	278	anti-parallel
Strand 6	A	282	286	anti-parallel
Strand 7	A	289	292	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	34	36	anti-parallel
Strand 3	C	54	57	anti-parallel
Strand 4	C	5	10	parallel
Strand 5	C	16	21	anti-parallel
Strand 6	K	72	73	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	200	first strand
Strand 2	C	182	189	anti-parallel
Strand 3	C	230	238	anti-parallel
Strand 4	C	220	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	200	first strand
Strand 2	C	182	189	anti-parallel
Strand 3	C	230	238	anti-parallel
Strand 4	C	310	311	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	241	253	parallel
Strand 3	C	296	306	anti-parallel
Strand 4	C	260	264	anti-parallel
Strand 5	C	273	277	anti-parallel
Strand 6	C	283	286	anti-parallel
Strand 7	C	289	292	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	34	36	anti-parallel
Strand 3	D	54	57	anti-parallel
Strand 4	D	5	10	parallel
Strand 5	D	16	21	anti-parallel
Strand 6	H	72	73	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	192	first strand
Strand 2	D	182	189	anti-parallel
Strand 3	D	229	238	anti-parallel
Strand 4	D	220	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	200	first strand
Strand 2	D	182	189	anti-parallel
Strand 3	D	229	238	anti-parallel
Strand 4	D	310	311	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	241	253	parallel
Strand 3	D	296	306	anti-parallel
Strand 4	D	260	264	anti-parallel
Strand 5	D	273	277	anti-parallel
Strand 6	D	283	286	anti-parallel
Strand 7	D	289	292	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	16	first strand
Strand 2	E	2	7	anti-parallel
Strand 3	I	66	70	parallel
Strand 4	I	42	45	anti-parallel
Strand 5	I	48	49	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	17	first strand
Strand 2	I	1	7	anti-parallel
Strand 3	E	66	70	parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	48	49	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	15	first strand
Strand 2	F	3	8	anti-parallel
Strand 3	G	66	70	parallel
Strand 4	G	42	45	anti-parallel
Strand 5	G	48	49	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	15	first strand
Strand 2	G	3	7	anti-parallel
Strand 3	F	66	70	parallel
Strand 4	F	42	44	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	3	first strand
Strand 2	L	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	8	first strand
Strand 2	L	10	12	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	14	first strand
Strand 2	L	4	7	anti-parallel
Strand 3	K	66	70	parallel
Strand 4	K	42	45	anti-parallel
Strand 5	K	48	49	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	44	first strand
Strand 2	L	68	70	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	15	first strand
Strand 2	H	3	8	anti-parallel
Strand 3	J	66	70	parallel
Strand 4	J	42	45	anti-parallel
Strand 5	J	48	49	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	J	4	7	anti-parallel
Strand 3	H	66	70	parallel
Strand 4	H	42	45	anti-parallel
Strand 5	H	48	49	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CX9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CX9