Analysis of interatomic Contacts of Structural Units in PDB entry:
8CXA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CXA entry

There are 4 chains in PDB entry 8CXA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15THR 265
B
 VAL 15THR 265
C
 VAL 15THR 265
D
 VAL 15THR 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8CXA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 42Right-handed alpha
Helix 2
AA2
A
52 66Right-handed alpha
Helix 3
AA3
A
79 95Right-handed alpha
Helix 4
AA4
A
114 118Right-handed 310
Helix 5
AA5
A
119 131Right-handed alpha
Helix 6
AA6
A
131 149Right-handed alpha
Helix 7
AA7
A
159 164Right-handed alpha
Helix 8
AA8
A
168 191Right-handed alpha
Helix 9
AA9
A
214 225Right-handed alpha
Helix 10
AB1
A
233 245Right-handed alpha
Helix 11
AB2
A
246 249Right-handed 310
Helix 12
AB3
B
29 42Right-handed alpha
Helix 13
AB4
B
52 66Right-handed alpha
Helix 14
AB5
B
79 95Right-handed alpha
Helix 15
AB6
B
114 118Right-handed 310
Helix 16
AB7
B
119 131Right-handed alpha
Helix 17
AB8
B
131 149Right-handed alpha
Helix 18
AB9
B
158 164Right-handed alpha
Helix 19
AC1
B
168 191Right-handed alpha
Helix 20
AC2
B
214 225Right-handed alpha
Helix 21
AC3
B
233 245Right-handed alpha
Helix 22
AC4
B
246 249Right-handed 310
Helix 23
AC5
C
29 42Right-handed alpha
Helix 24
AC6
C
52 66Right-handed alpha
Helix 25
AC7
C
79 95Right-handed alpha
Helix 26
AC8
C
114 118Right-handed 310
Helix 27
AC9
C
119 131Right-handed alpha
Helix 28
AD1
C
131 149Right-handed alpha
Helix 29
AD2
C
158 164Right-handed alpha
Helix 30
AD3
C
168 190Right-handed alpha
Helix 31
AD4
C
203 206Right-handed 310
Helix 32
AD5
C
214 225Right-handed alpha
Helix 33
AD6
C
233 245Right-handed alpha
Helix 34
AD7
C
246 249Right-handed 310
Helix 35
AD8
D
29 42Right-handed alpha
Helix 36
AD9
D
52 66Right-handed alpha
Helix 37
AE1
D
79 95Right-handed alpha
Helix 38
AE2
D
114 118Right-handed 310
Helix 39
AE3
D
119 131Right-handed alpha
Helix 40
AE4
D
131 149Right-handed alpha
Helix 41
AE5
D
158 164Right-handed alpha
Helix 42
AE6
D
168 190Right-handed alpha
Helix 43
AE7
D
214 225Right-handed alpha
Helix 44
AE8
D
233 245Right-handed alpha
Helix 45
AE9
D
246 249Right-handed 310
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There are 5 sheets in PDB entry 8CXA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
45 50parallel
Strand 3
A
21 25parallel
Strand 4
A
99 102parallel
Strand 5
A
152 156parallel
Strand 6
A
195 201parallel
Strand 7
A
255 258parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
231 232parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
45 50parallel
Strand 3
B
21 25parallel
Strand 4
B
99 102parallel
Strand 5
B
152 156parallel
Strand 6
B
195 201parallel
Strand 7
B
255 258parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 74first strand
Strand 2
C
45 50parallel
Strand 3
C
21 24parallel
Strand 4
C
99 102parallel
Strand 5
C
151 156parallel
Strand 6
C
194 201parallel
Strand 7
C
255 258parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 74first strand
Strand 2
D
45 50parallel
Strand 3
D
21 25parallel
Strand 4
D
99 102parallel
Strand 5
D
151 156parallel
Strand 6
D
194 201parallel
Strand 7
D
255 258parallel
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