Analysis of interatomic Contacts of Structural Units in PDB entry:
8CXI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CXI entry

There are 10 chains in PDB entry 8CXI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	ALA 501
D	ALA 1	SER 75
H	GLU 1	SER 112
L	VAL 8	GLY 108
B	ILE 1	ALA 501
E	ALA 1	SER 75
h	GLU 1	SER 112
l	VAL 8	THR 105
C	ILE 1	ALA 501
F	ALA 1	SER 75

There are 44 helices in PDB entry 8CXI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	263	269	Right-handed alpha
Helix 2	AA2	A	405	425	Right-handed alpha
Helix 3	AA3	A	426	431	Right-handed 310
Helix 4	AA4	A	437	457	Right-handed alpha
Helix 5	AA5	A	461	478	Right-handed alpha
Helix 6	AA6	A	483	499	Right-handed alpha
Helix 7	AA7	D	7	11	Right-handed 310
Helix 8	AA8	D	23	39	Right-handed alpha
Helix 9	AA9	D	41	53	Right-handed alpha
Helix 10	AB1	D	56	71	Right-handed alpha
Helix 11	AB2	H	28	32	Right-handed 310
Helix 12	AB3	H	83	87	Right-handed 310
Helix 13	AB4	H	97	100	Right-handed alpha
Helix 14	AB5	L	27	32	Right-handed alpha
Helix 15	AB6	L	79	83	Right-handed 310
Helix 16	AB7	B	82	87	Right-handed 310
Helix 17	AB8	B	149	153	Right-handed 310
Helix 18	AB9	B	157	162	Right-handed alpha
Helix 19	AC1	B	215	220	Right-handed alpha
Helix 20	AC2	B	261	269	Right-handed alpha
Helix 21	AC3	B	405	425	Right-handed alpha
Helix 22	AC4	B	426	429	Right-handed 310
Helix 23	AC5	B	437	457	Right-handed alpha
Helix 24	AC6	B	463	478	Right-handed alpha
Helix 25	AC7	B	482	500	Right-handed alpha
Helix 26	AC8	E	6	11	Right-handed 310
Helix 27	AC9	E	23	39	Right-handed alpha
Helix 28	AD1	E	40	52	Right-handed alpha
Helix 29	AD2	E	56	71	Right-handed alpha
Helix 30	AD3	h	28	32	Right-handed 310
Helix 31	AD4	h	83	87	Right-handed 310
Helix 32	AD5	l	28	33	Right-handed 310
Helix 33	AD6	l	79	83	Right-handed 310
Helix 34	AD7	C	82	86	Right-handed 310
Helix 35	AD8	C	261	269	Right-handed alpha
Helix 36	AD9	C	405	425	Right-handed alpha
Helix 37	AE1	C	426	431	Right-handed 310
Helix 38	AE2	C	437	457	Right-handed alpha
Helix 39	AE3	C	463	479	Right-handed alpha
Helix 40	AE4	C	483	500	Right-handed alpha
Helix 41	AE5	F	7	11	Right-handed 310
Helix 42	AE6	F	23	39	Right-handed alpha
Helix 43	AE7	F	40	52	Right-handed alpha
Helix 44	AE8	F	56	74	Right-handed alpha

There are 40 sheets in PDB entry 8CXI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	31	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	281	284	anti-parallel
Strand 5	A	274	278	anti-parallel
Strand 6	A	210	214	anti-parallel
Strand 7	A	201	205	anti-parallel
Strand 8	A	125	129	anti-parallel
Strand 9	A	54	59	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	31	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	164	169	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	26	first strand
Strand 2	A	288	294	anti-parallel
Strand 3	A	184	191	anti-parallel
Strand 4	A	175	180	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	65	first strand
Strand 2	A	112	121	anti-parallel
Strand 3	A	69	73	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	65	first strand
Strand 2	A	112	121	anti-parallel
Strand 3	A	90	95	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	247	first strand
Strand 2	A	253	257	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	319	320	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	372	378	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	384	389	anti-parallel
Strand 3	A	396	401	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	94	anti-parallel
Strand 5	H	102	103	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	94	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	62	66	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	31	33	parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	281	284	anti-parallel
Strand 5	B	274	278	anti-parallel
Strand 6	B	210	214	anti-parallel
Strand 7	B	201	205	anti-parallel
Strand 8	B	126	129	anti-parallel
Strand 9	B	54	55	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	31	33	parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	135	143	anti-parallel
Strand 5	B	164	169	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	26	first strand
Strand 2	B	288	298	anti-parallel
Strand 3	B	184	190	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	225	226	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	72	first strand
Strand 2	B	110	121	anti-parallel
Strand 3	B	90	98	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	247	first strand
Strand 2	B	253	257	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	320	first strand
Strand 2	B	326	332	anti-parallel
Strand 3	B	372	378	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	364	365	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	384	389	anti-parallel
Strand 3	B	396	401	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	3	7	first strand
Strand 2	h	18	25	anti-parallel
Strand 3	h	77	82	anti-parallel
Strand 4	h	67	72	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	11	12	first strand
Strand 2	h	107	111	parallel
Strand 3	h	88	95	anti-parallel
Strand 4	h	33	39	anti-parallel
Strand 5	h	45	51	anti-parallel
Strand 6	h	57	59	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	11	12	first strand
Strand 2	h	107	111	parallel
Strand 3	h	88	95	anti-parallel
Strand 4	h	102	103	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	9	12	first strand
Strand 2	l	102	105	parallel
Strand 3	l	84	90	anti-parallel
Strand 4	l	34	38	anti-parallel
Strand 5	l	45	48	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	9	12	first strand
Strand 2	l	102	105	parallel
Strand 3	l	84	90	anti-parallel
Strand 4	l	97	98	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	19	23	first strand
Strand 2	l	71	75	anti-parallel
Strand 3	l	62	66	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	31	34	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	281	284	anti-parallel
Strand 5	C	274	278	anti-parallel
Strand 6	C	210	214	anti-parallel
Strand 7	C	201	205	anti-parallel
Strand 8	C	126	129	anti-parallel
Strand 9	C	54	56	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	31	34	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	135	143	anti-parallel
Strand 5	C	164	169	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	288	294	anti-parallel
Strand 3	C	184	190	anti-parallel
Strand 4	C	175	180	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	65	first strand
Strand 2	C	113	121	anti-parallel
Strand 3	C	69	72	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	65	first strand
Strand 2	C	113	121	anti-parallel
Strand 3	C	90	95	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	254	257	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	319	320	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	372	378	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	364	365	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	346	first strand
Strand 2	C	385	389	anti-parallel
Strand 3	C	396	400	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CXI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CXI