Analysis of interatomic Contacts of Structural Units in PDB entry:
8CXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CXL entry

There are 4 chains in PDB entry 8CXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ALA 444
A
 PHE 446VAL 476
B
 PRO 11ALA 444
B
 PHE 446VAL 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 8CXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 23Right-handed alpha
Helix 2
AA2
A
42 62Right-handed alpha
Helix 3
AA3
A
63 65Right-handed 310
Helix 4
AA4
A
79 84Right-handed 310
Helix 5
AA5
A
86 105Right-handed alpha
Helix 6
AA6
A
108 119Right-handed alpha
Helix 7
AA7
A
132 149Right-handed alpha
Helix 8
AA8
A
217 223Right-handed 310
Helix 9
AA9
A
230 234Right-handed 310
Helix 10
AB1
A
239 243Right-handed 310
Helix 11
AB2
A
246 263Right-handed alpha
Helix 12
AB3
A
265 276Right-handed alpha
Helix 13
AB4
A
280 292Right-handed alpha
Helix 14
AB5
A
296 326Right-handed alpha
Helix 15
AB6
A
329 339Right-handed alpha
Helix 16
AB7
A
360 362Right-handed 310
Helix 17
AB8
A
376 394Right-handed alpha
Helix 18
AB9
A
428 442Right-handed alpha
Helix 19
AC1
A
446 473Right-handed alpha
Helix 20
AC2
B
18 23Right-handed alpha
Helix 21
AC3
B
42 62Right-handed alpha
Helix 22
AC4
B
63 65Right-handed 310
Helix 23
AC5
B
79 84Right-handed 310
Helix 24
AC6
B
86 105Right-handed alpha
Helix 25
AC7
B
108 119Right-handed alpha
Helix 26
AC8
B
132 149Right-handed alpha
Helix 27
AC9
B
217 223Right-handed 310
Helix 28
AD1
B
230 234Right-handed 310
Helix 29
AD2
B
239 243Right-handed 310
Helix 30
AD3
B
246 263Right-handed alpha
Helix 31
AD4
B
265 276Right-handed alpha
Helix 32
AD5
B
277 293Right-handed alpha
Helix 33
AD6
B
296 326Right-handed alpha
Helix 34
AD7
B
329 339Right-handed alpha
Helix 35
AD8
B
360 362Right-handed 310
Helix 36
AD9
B
376 394Right-handed alpha
Helix 37
AE1
B
428 442Right-handed alpha
Helix 38
AE2
B
446 473Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8CXL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
210 213anti-parallel
Strand 3
B
210 213anti-parallel
Strand 4
B
193 195anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 346first strand
Strand 2
A
353 358anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 404first strand
Strand 2
A
421 427anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 346first strand
Strand 2
B
353 358anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 404first strand
Strand 2
B
421 427anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il