Analysis of interatomic Contacts of Structural Units in PDB entry:
8CXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CXO entry

There is 1 chain in PDB entry 8CXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 195LEU 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 8CXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
227 259Right-handed alpha
Helix 2
AA2
A
259 264Right-handed alpha
Helix 3
AA3
A
265 268Right-handed 310
Helix 4
AA4
A
269 287Right-handed alpha
Helix 5
AA5
A
288 290Right-handed 310
Helix 6
AA6
A
292 299Right-handed alpha
Helix 7
AA7
A
316 347Right-handed alpha
Helix 8
AA8
A
357 359Right-handed 310
Helix 9
AA9
A
360 382Right-handed alpha
Helix 10
AB1
A
400 408Right-handed alpha
Helix 11
AB2
A
408 437Right-handed alpha
Helix 12
AB3
A
1015 1027Right-handed alpha
Helix 13
AB4
A
1047 1059Right-handed alpha
Helix 14
AB5
A
1060 1065Right-handed 310
Helix 15
AB6
A
1076 1090Right-handed alpha
Helix 16
AB7
A
1101 1112Right-handed alpha
Helix 17
AB8
A
1126 1134Right-handed alpha
Helix 18
AB9
A
1143 1149Right-handed 310
Helix 19
AC1
A
1162 1178Right-handed alpha
Helix 20
AC2
A
1181 1193Right-handed alpha
Helix 21
AC3
A
1206 452Right-handed 310
Helix 22
AC4
A
454 494Right-handed alpha
Helix 23
AC5
A
495 497Right-handed 310
Helix 24
AC6
A
518 537Right-handed alpha
Helix 25
AC7
A
538 541Right-handed 310
Helix 26
AC8
A
542 554Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8CXO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
217 219anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 388first strand
Strand 2
A
393 396anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1093 1096first strand
Strand 2
A
1067 1072parallel
Strand 3
A
1033 1038parallel
Strand 4
A
1114 1117parallel
Strand 5
A
1137 1141parallel
Strand 6
A
1156 1158parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il