Analysis of interatomic Contacts of Structural Units in PDB entry:
8CY3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CY3 entry

There are 3 chains in PDB entry 8CY3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 28	ILE 577
B	GLY 28	ILE 577
C	ILE 29	PRO 167

There are 88 helices in PDB entry 8CY3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	46	Right-handed alpha
Helix 2	AA2	A	66	83	Right-handed alpha
Helix 3	AA3	A	83	91	Right-handed alpha
Helix 4	AA4	A	100	109	Right-handed alpha
Helix 5	AA5	A	116	130	Right-handed alpha
Helix 6	AA6	A	175	186	Right-handed alpha
Helix 7	AA7	A	195	207	Right-handed alpha
Helix 8	AA8	A	221	224	Right-handed 310
Helix 9	AA9	A	228	239	Right-handed alpha
Helix 10	AB1	A	292	299	Right-handed alpha
Helix 11	AB2	A	310	312	Right-handed 310
Helix 12	AB3	A	320	334	Right-handed alpha
Helix 13	AB4	A	338	341	Right-handed alpha
Helix 14	AB5	A	352	356	Right-handed alpha
Helix 15	AB6	A	362	368	Right-handed 310
Helix 16	AB7	A	369	371	Right-handed 310
Helix 17	AB8	A	378	382	Right-handed 310
Helix 18	AB9	A	397	400	Right-handed 310
Helix 19	AC1	A	406	413	Right-handed alpha
Helix 20	AC2	A	414	416	Right-handed 310
Helix 21	AC3	A	417	423	Right-handed alpha
Helix 22	AC4	A	424	429	Right-handed alpha
Helix 23	AC5	A	442	447	Right-handed alpha
Helix 24	AC6	A	482	485	Right-handed 310
Helix 25	AC7	A	489	498	Right-handed alpha
Helix 26	AC8	A	499	510	Right-handed alpha
Helix 27	AC9	A	521	526	Right-handed alpha
Helix 28	AD1	A	535	551	Right-handed alpha
Helix 29	AD2	A	556	576	Right-handed alpha
Helix 30	AD3	B	33	46	Right-handed alpha
Helix 31	AD4	B	66	83	Right-handed alpha
Helix 32	AD5	B	83	91	Right-handed alpha
Helix 33	AD6	B	100	109	Right-handed alpha
Helix 34	AD7	B	116	130	Right-handed alpha
Helix 35	AD8	B	175	186	Right-handed alpha
Helix 36	AD9	B	195	207	Right-handed alpha
Helix 37	AE1	B	221	224	Right-handed 310
Helix 38	AE2	B	228	239	Right-handed alpha
Helix 39	AE3	B	292	299	Right-handed alpha
Helix 40	AE4	B	310	312	Right-handed 310
Helix 41	AE5	B	320	334	Right-handed alpha
Helix 42	AE6	B	338	341	Right-handed alpha
Helix 43	AE7	B	352	356	Right-handed alpha
Helix 44	AE8	B	362	368	Right-handed 310
Helix 45	AE9	B	369	371	Right-handed 310
Helix 46	AF1	B	378	382	Right-handed 310
Helix 47	AF2	B	397	400	Right-handed 310
Helix 48	AF3	B	406	413	Right-handed alpha
Helix 49	AF4	B	414	416	Right-handed 310
Helix 50	AF5	B	417	423	Right-handed alpha
Helix 51	AF6	B	424	429	Right-handed alpha
Helix 52	AF7	B	442	447	Right-handed alpha
Helix 53	AF8	B	482	485	Right-handed 310
Helix 54	AF9	B	489	498	Right-handed alpha
Helix 55	AG1	B	499	510	Right-handed alpha
Helix 56	AG2	B	521	526	Right-handed alpha
Helix 57	AG3	B	535	551	Right-handed alpha
Helix 58	AG4	B	556	576	Right-handed alpha
Helix 59	AG5	C	33	46	Right-handed alpha
Helix 60	AG6	C	66	83	Right-handed alpha
Helix 61	AG7	C	83	91	Right-handed alpha
Helix 62	AG8	C	100	109	Right-handed alpha
Helix 63	AG9	C	116	130	Right-handed alpha
Helix 64	AH1	C	175	186	Right-handed alpha
Helix 65	AH2	C	195	207	Right-handed alpha
Helix 66	AH3	C	221	224	Right-handed 310
Helix 67	AH4	C	225	227	Right-handed 310
Helix 68	AH5	C	228	239	Right-handed alpha
Helix 69	AH6	C	286	290	Right-handed 310
Helix 70	AH7	C	292	298	Right-handed alpha
Helix 71	AH8	C	310	312	Right-handed 310
Helix 72	AH9	C	320	334	Right-handed alpha
Helix 73	AI1	C	338	341	Right-handed alpha
Helix 74	AI2	C	352	356	Right-handed alpha
Helix 75	AI3	C	362	368	Right-handed 310
Helix 76	AI4	C	378	382	Right-handed 310
Helix 77	AI5	C	397	400	Right-handed 310
Helix 78	AI6	C	406	413	Right-handed alpha
Helix 79	AI7	C	414	416	Right-handed 310
Helix 80	AI8	C	417	423	Right-handed alpha
Helix 81	AI9	C	424	430	Right-handed alpha
Helix 82	AJ1	C	442	447	Right-handed alpha
Helix 83	AJ2	C	482	485	Right-handed 310
Helix 84	AJ3	C	489	498	Right-handed alpha
Helix 85	AJ4	C	499	510	Right-handed alpha
Helix 86	AJ5	C	521	526	Right-handed alpha
Helix 87	AJ6	C	535	551	Right-handed alpha
Helix 88	AJ7	C	556	576	Right-handed alpha

There are 15 sheets in PDB entry 8CY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	147	first strand
Strand 2	A	110	114	parallel
Strand 3	A	58	60	parallel
Strand 4	A	159	164	parallel
Strand 5	A	208	219	parallel
Strand 6	A	260	266	anti-parallel
Strand 7	A	240	246	anti-parallel
Strand 8	A	274	280	parallel
Strand 9	A	302	308	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	529	530	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	475	480	anti-parallel
Strand 3	A	450	454	anti-parallel
Strand 4	A	463	465	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	A	392	395	anti-parallel
Strand 3	A	373	377	anti-parallel
Strand 4	A	470	471	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	517	519	anti-parallel
Strand 3	A	511	514	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	110	114	parallel
Strand 3	B	58	60	parallel
Strand 4	B	159	164	parallel
Strand 5	B	208	219	parallel
Strand 6	B	260	266	anti-parallel
Strand 7	B	240	246	anti-parallel
Strand 8	B	274	280	parallel
Strand 9	B	302	308	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	529	530	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	475	480	anti-parallel
Strand 3	B	450	454	anti-parallel
Strand 4	B	463	465	anti-parallel
Strand 5	B	385	386	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	359	first strand
Strand 2	B	392	395	anti-parallel
Strand 3	B	373	377	anti-parallel
Strand 4	B	470	471	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	B	517	519	anti-parallel
Strand 3	B	511	514	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	147	first strand
Strand 2	C	110	114	parallel
Strand 3	C	58	60	parallel
Strand 4	C	159	164	parallel
Strand 5	C	208	219	parallel
Strand 6	C	260	266	anti-parallel
Strand 7	C	240	246	anti-parallel
Strand 8	C	274	280	parallel
Strand 9	C	302	308	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	529	530	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	475	480	anti-parallel
Strand 3	C	450	454	anti-parallel
Strand 4	C	463	465	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	359	first strand
Strand 2	C	392	395	anti-parallel
Strand 3	C	373	377	anti-parallel
Strand 4	C	470	471	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	517	519	anti-parallel
Strand 3	C	511	514	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CY3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CY3