Analysis of interatomic Contacts of Structural Units in PDB entry:
8CY7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CY7 entry

There are 6 chains in PDB entry 8CY7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 25	SER 1147
B	PRO 25	SER 1147
C	PRO 25	SER 1147
D	GLN 1	SER 121
E	GLN 1	SER 121
F	GLN 1	SER 121

There are 69 helices in PDB entry 8CY7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	338	343	Right-handed alpha
Helix 3	AA3	A	364	370	Right-handed alpha
Helix 4	AA4	A	405	407	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	A	619	623	Right-handed 310
Helix 8	AA8	A	632	637	Right-handed alpha
Helix 9	AA9	A	737	743	Right-handed alpha
Helix 10	AB1	A	746	757	Right-handed alpha
Helix 11	AB2	A	758	783	Right-handed alpha
Helix 12	AB3	A	816	826	Right-handed alpha
Helix 13	AB4	A	866	884	Right-handed alpha
Helix 14	AB5	A	886	891	Right-handed 310
Helix 15	AB6	A	897	909	Right-handed alpha
Helix 16	AB7	A	912	919	Right-handed alpha
Helix 17	AB8	A	919	941	Right-handed alpha
Helix 18	AB9	A	945	965	Right-handed alpha
Helix 19	AC1	A	966	968	Right-handed 310
Helix 20	AC2	A	976	984	Right-handed alpha
Helix 21	AC3	A	985	1032	Right-handed alpha
Helix 22	AC4	A	1140	1147	Right-handed alpha
Helix 23	AC5	B	294	304	Right-handed alpha
Helix 24	AC6	B	337	343	Right-handed alpha
Helix 25	AC7	B	349	353	Right-handed 310
Helix 26	AC8	B	364	372	Right-handed alpha
Helix 27	AC9	B	385	390	Right-handed 310
Helix 28	AD1	B	405	407	Right-handed 310
Helix 29	AD2	B	418	423	Right-handed alpha
Helix 30	AD3	B	438	443	Right-handed alpha
Helix 31	AD4	B	616	620	Right-handed 310
Helix 32	AD5	B	632	638	Right-handed alpha
Helix 33	AD6	B	737	743	Right-handed alpha
Helix 34	AD7	B	746	757	Right-handed alpha
Helix 35	AD8	B	758	783	Right-handed alpha
Helix 36	AD9	B	816	826	Right-handed alpha
Helix 37	AE1	B	866	884	Right-handed alpha
Helix 38	AE2	B	886	891	Right-handed 310
Helix 39	AE3	B	897	909	Right-handed alpha
Helix 40	AE4	B	913	919	Right-handed alpha
Helix 41	AE5	B	919	941	Right-handed alpha
Helix 42	AE6	B	945	965	Right-handed alpha
Helix 43	AE7	B	966	968	Right-handed 310
Helix 44	AE8	B	976	984	Right-handed alpha
Helix 45	AE9	B	985	1032	Right-handed alpha
Helix 46	AF1	B	1140	1147	Right-handed alpha
Helix 47	AF2	C	294	304	Right-handed alpha
Helix 48	AF3	C	337	343	Right-handed alpha
Helix 49	AF4	C	365	370	Right-handed alpha
Helix 50	AF5	C	385	390	Right-handed alpha
Helix 51	AF6	C	405	407	Right-handed 310
Helix 52	AF7	C	418	423	Right-handed alpha
Helix 53	AF8	C	438	443	Right-handed alpha
Helix 54	AF9	C	737	743	Right-handed alpha
Helix 55	AG1	C	746	757	Right-handed alpha
Helix 56	AG2	C	758	783	Right-handed alpha
Helix 57	AG3	C	816	825	Right-handed alpha
Helix 58	AG4	C	866	884	Right-handed alpha
Helix 59	AG5	C	886	891	Right-handed 310
Helix 60	AG6	C	897	909	Right-handed alpha
Helix 61	AG7	C	912	919	Right-handed alpha
Helix 62	AG8	C	919	941	Right-handed alpha
Helix 63	AG9	C	945	965	Right-handed alpha
Helix 64	AH1	C	976	984	Right-handed alpha
Helix 65	AH2	C	985	1033	Right-handed alpha
Helix 66	AH3	C	1140	1146	Right-handed alpha
Helix 67	AH4	D	86	90	Right-handed 310
Helix 68	AH5	E	86	90	Right-handed 310
Helix 69	AH6	F	86	90	Right-handed 310

There are 54 sheets in PDB entry 8CY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	61	64	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	52	first strand
Strand 2	A	274	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	229	first strand
Strand 2	A	200	209	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	89	96	anti-parallel
Strand 5	A	265	269	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	117	122	anti-parallel
Strand 3	A	103	107	anti-parallel
Strand 4	A	237	240	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	316	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	539	543	parallel
Strand 3	A	546	550	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	524	525	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	554	first strand
Strand 2	A	584	586	anti-parallel
Strand 3	A	573	577	anti-parallel
Strand 4	A	565	567	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	693	696	parallel
Strand 3	A	670	673	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	703	first strand
Strand 2	C	788	789	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	1074	1075	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	728	first strand
Strand 2	A	1059	1071	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	736	first strand
Strand 2	A	858	860	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	789	first strand
Strand 2	B	702	703	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1123	first strand
Strand 2	A	1087	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1097	first strand
Strand 2	A	1102	1105	anti-parallel
Strand 3	A	1113	1114	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	61	64	anti-parallel
Strand 3	B	265	269	anti-parallel
Strand 4	B	89	94	anti-parallel
Strand 5	B	189	197	anti-parallel
Strand 6	B	200	208	anti-parallel
Strand 7	B	225	229	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	52	first strand
Strand 2	B	274	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	240	anti-parallel
Strand 3	B	103	107	anti-parallel
Strand 4	B	117	122	anti-parallel
Strand 5	B	125	129	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	316	first strand
Strand 2	B	595	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	644	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	551	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	453	first strand
Strand 2	B	493	497	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	584	586	anti-parallel
Strand 3	B	573	577	anti-parallel
Strand 4	B	565	567	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	693	696	parallel
Strand 3	B	670	673	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	713	first strand
Strand 2	B	1074	1075	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	728	first strand
Strand 2	B	1059	1071	anti-parallel
Strand 3	B	1047	1050	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	728	first strand
Strand 2	B	1059	1071	anti-parallel
Strand 3	B	1053	1056	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	735	736	first strand
Strand 2	B	858	859	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	789	first strand
Strand 2	C	702	703	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1123	first strand
Strand 2	B	1087	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	265	269	anti-parallel
Strand 4	C	89	94	anti-parallel
Strand 5	C	188	197	anti-parallel
Strand 6	C	200	209	anti-parallel
Strand 7	C	225	229	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	278	anti-parallel
Strand 3	C	287	290	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	104	107	anti-parallel
Strand 4	C	117	122	anti-parallel
Strand 5	C	125	129	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	317	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	643	644	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	394	403	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	543	first strand
Strand 2	C	546	555	anti-parallel
Strand 3	C	584	588	anti-parallel
Strand 4	C	573	577	anti-parallel
Strand 5	C	565	567	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	664	667	first strand
Strand 2	C	670	673	anti-parallel
Strand 3	C	693	696	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	713	first strand
Strand 2	C	1074	1075	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	728	first strand
Strand 2	C	1059	1071	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1123	first strand
Strand 2	C	1087	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	115	120	parallel
Strand 3	D	91	100	anti-parallel
Strand 4	D	32	38	anti-parallel
Strand 5	D	45	50	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	115	120	parallel
Strand 3	D	91	100	anti-parallel
Strand 4	D	106	110	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	77	83	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	115	120	parallel
Strand 3	E	91	99	anti-parallel
Strand 4	E	32	38	anti-parallel
Strand 5	E	45	50	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	115	120	parallel
Strand 3	E	91	99	anti-parallel
Strand 4	E	107	110	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	8	first strand
Strand 2	F	17	23	anti-parallel
Strand 3	F	77	83	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	115	120	parallel
Strand 3	F	91	98	anti-parallel
Strand 4	F	32	38	anti-parallel
Strand 5	F	45	50	anti-parallel
Strand 6	F	57	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CY7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CY7