Analysis of interatomic Contacts of Structural Units in PDB entry:
8CYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CYA entry

There are 6 chains in PDB entry 8CYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	CYS 15	SER 1147
A	CYS 15	SER 1147
C	CYS 15	SER 1147
D	GLU 1	SER 127
E	GLU 1	SER 127
F	GLU 1	SER 127

There are 79 helices in PDB entry 8CYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	294	304	Right-handed alpha
Helix 2	AA2	B	336	342	Right-handed alpha
Helix 3	AA3	B	404	410	Right-handed 310
Helix 4	AA4	B	417	422	Right-handed alpha
Helix 5	AA5	B	616	618	Right-handed 310
Helix 6	AA6	B	619	624	Right-handed alpha
Helix 7	AA7	B	632	637	Right-handed alpha
Helix 8	AA8	B	737	744	Right-handed alpha
Helix 9	AA9	B	746	755	Right-handed alpha
Helix 10	AB1	B	758	783	Right-handed alpha
Helix 11	AB2	B	816	826	Right-handed alpha
Helix 12	AB3	B	849	853	Right-handed 310
Helix 13	AB4	B	866	884	Right-handed alpha
Helix 14	AB5	B	886	891	Right-handed 310
Helix 15	AB6	B	897	909	Right-handed alpha
Helix 16	AB7	B	913	919	Right-handed alpha
Helix 17	AB8	B	919	941	Right-handed alpha
Helix 18	AB9	B	942	944	Right-handed 310
Helix 19	AC1	B	945	966	Right-handed alpha
Helix 20	AC2	B	976	984	Right-handed alpha
Helix 21	AC3	B	985	1033	Right-handed alpha
Helix 22	AC4	B	1116	1118	Right-handed 310
Helix 23	AC5	B	1140	1147	Right-handed alpha
Helix 24	AC6	A	294	304	Right-handed alpha
Helix 25	AC7	A	337	343	Right-handed alpha
Helix 26	AC8	A	349	353	Right-handed 310
Helix 27	AC9	A	364	369	Right-handed alpha
Helix 28	AD1	A	405	410	Right-handed 310
Helix 29	AD2	A	502	505	Right-handed 310
Helix 30	AD3	A	616	618	Right-handed 310
Helix 31	AD4	A	619	624	Right-handed alpha
Helix 32	AD5	A	632	638	Right-handed alpha
Helix 33	AD6	A	737	743	Right-handed alpha
Helix 34	AD7	A	746	755	Right-handed alpha
Helix 35	AD8	A	758	783	Right-handed alpha
Helix 36	AD9	A	816	826	Right-handed alpha
Helix 37	AE1	A	849	854	Right-handed 310
Helix 38	AE2	A	866	884	Right-handed alpha
Helix 39	AE3	A	886	891	Right-handed 310
Helix 40	AE4	A	897	909	Right-handed alpha
Helix 41	AE5	A	913	919	Right-handed alpha
Helix 42	AE6	A	919	941	Right-handed alpha
Helix 43	AE7	A	945	965	Right-handed alpha
Helix 44	AE8	A	966	968	Right-handed 310
Helix 45	AE9	A	976	984	Right-handed alpha
Helix 46	AF1	A	985	1032	Right-handed alpha
Helix 47	AF2	A	1116	1118	Right-handed 310
Helix 48	AF3	A	1141	1147	Right-handed alpha
Helix 49	AF4	C	294	304	Right-handed alpha
Helix 50	AF5	C	336	343	Right-handed alpha
Helix 51	AF6	C	366	371	Right-handed 310
Helix 52	AF7	C	405	410	Right-handed 310
Helix 53	AF8	C	416	420	Right-handed 310
Helix 54	AF9	C	502	505	Right-handed 310
Helix 55	AG1	C	616	618	Right-handed 310
Helix 56	AG2	C	619	624	Right-handed alpha
Helix 57	AG3	C	632	638	Right-handed alpha
Helix 58	AG4	C	737	743	Right-handed alpha
Helix 59	AG5	C	746	755	Right-handed alpha
Helix 60	AG6	C	758	783	Right-handed alpha
Helix 61	AG7	C	816	826	Right-handed alpha
Helix 62	AG8	C	849	853	Right-handed 310
Helix 63	AG9	C	866	883	Right-handed alpha
Helix 64	AH1	C	886	891	Right-handed 310
Helix 65	AH2	C	897	909	Right-handed alpha
Helix 66	AH3	C	913	919	Right-handed alpha
Helix 67	AH4	C	919	941	Right-handed alpha
Helix 68	AH5	C	945	965	Right-handed alpha
Helix 69	AH6	C	966	968	Right-handed 310
Helix 70	AH7	C	976	984	Right-handed alpha
Helix 71	AH8	C	985	1032	Right-handed alpha
Helix 72	AH9	C	1116	1118	Right-handed 310
Helix 73	AI1	C	1141	1147	Right-handed alpha
Helix 74	AI2	D	65	68	Right-handed 310
Helix 75	AI3	D	90	94	Right-handed 310
Helix 76	AI4	E	65	68	Right-handed 310
Helix 77	AI5	E	90	94	Right-handed 310
Helix 78	AI6	F	65	68	Right-handed 310
Helix 79	AI7	F	90	94	Right-handed 310

There are 55 sheets in PDB entry 8CYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	264	269	anti-parallel
Strand 4	B	90	96	anti-parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	200	209	anti-parallel
Strand 7	B	225	230	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	C	565	567	parallel
Strand 3	C	573	577	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	546	554	anti-parallel
Strand 6	C	538	543	anti-parallel
Strand 7	C	324	328	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	77	78	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	246	anti-parallel
Strand 3	B	101	105	anti-parallel
Strand 4	B	116	120	anti-parallel
Strand 5	B	127	131	anti-parallel
Strand 6	B	168	171	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	157	first strand
Strand 2	B	141	146	anti-parallel
Strand 3	B	237	246	parallel
Strand 4	B	258	259	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	318	first strand
Strand 2	B	593	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	644	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	573	577	anti-parallel
Strand 6	B	565	567	anti-parallel
Strand 7	A	42	43	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	356	first strand
Strand 2	B	397	399	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	378	first strand
Strand 2	B	431	437	anti-parallel
Strand 3	B	508	514	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	493	494	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	693	696	parallel
Strand 3	B	670	673	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	704	first strand
Strand 2	A	788	790	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1053	1056	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1047	1050	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1103	1105	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	735	736	first strand
Strand 2	B	858	859	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	789	first strand
Strand 2	C	702	703	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1125	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	65	69	anti-parallel
Strand 3	A	264	269	anti-parallel
Strand 4	A	90	96	anti-parallel
Strand 5	A	188	196	anti-parallel
Strand 6	A	200	209	anti-parallel
Strand 7	A	225	230	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	242	anti-parallel
Strand 3	A	101	105	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	126	131	anti-parallel
Strand 6	A	168	171	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	146	first strand
Strand 2	A	151	157	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	258	259	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	318	first strand
Strand 2	A	593	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	551	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	432	434	anti-parallel
Strand 3	A	511	512	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	507	508	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	554	first strand
Strand 2	A	584	586	anti-parallel
Strand 3	A	573	577	anti-parallel
Strand 4	A	565	567	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	693	696	parallel
Strand 3	A	670	673	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	704	first strand
Strand 2	C	788	790	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	728	first strand
Strand 2	A	1059	1077	anti-parallel
Strand 3	A	1053	1056	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1047	1050	first strand
Strand 2	A	1059	1077	anti-parallel
Strand 3	A	1096	1097	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	736	first strand
Strand 2	A	858	859	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	63	66	anti-parallel
Strand 3	C	264	269	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	188	197	anti-parallel
Strand 6	C	200	209	anti-parallel
Strand 7	C	222	229	anti-parallel
Strand 8	C	36	37	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	77	78	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	246	anti-parallel
Strand 3	C	101	105	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	126	131	anti-parallel
Strand 6	C	168	170	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	157	first strand
Strand 2	C	141	146	anti-parallel
Strand 3	C	237	246	parallel
Strand 4	C	258	259	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	317	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	645	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	394	399	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	436	anti-parallel
Strand 5	C	377	379	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	394	399	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	402	403	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	693	696	parallel
Strand 3	C	670	673	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1076	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	736	first strand
Strand 2	C	858	859	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	81	87	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	121	126	parallel
Strand 3	D	95	101	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	53	anti-parallel
Strand 6	D	59	63	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	121	126	parallel
Strand 3	D	95	101	anti-parallel
Strand 4	D	116	117	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	81	87	anti-parallel
Strand 4	E	71	76	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	121	126	parallel
Strand 3	E	95	101	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	53	anti-parallel
Strand 6	E	59	63	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	121	126	parallel
Strand 3	E	95	101	anti-parallel
Strand 4	E	116	117	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	81	87	anti-parallel
Strand 4	F	71	76	anti-parallel

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There are 6 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	121	126	parallel
Strand 3	F	95	101	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	53	anti-parallel
Strand 6	F	59	63	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	121	126	parallel
Strand 3	F	95	101	anti-parallel
Strand 4	F	116	117	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 8CYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CYA