Analysis of interatomic Contacts of Structural Units in PDB entry:
8CYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CYE entry

There are 22 chains in PDB entry 8CYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	GLN 547
A	ALA 2	GLN 547
M	ALA 2	GLN 547
C	ALA 2	GLN 547
N	ALA 2	GLN 547
D	ALA 2	GLN 547
O	ALA 2	GLN 547
E	ALA 2	GLN 547
P	ALA 2	GLN 547
F	ALA 2	GLN 547
Q	ALA 2	GLN 547
G	ALA 2	GLN 547
R	ALA 2	GLN 547
H	ALA 2	GLN 547
S	ALA 2	GLN 547
I	ALA 2	GLN 547
T	ALA 2	GLN 547
J	ALA 2	GLN 547
U	ALA 2	GLN 547
K	ALA 2	GLN 547
V	ALA 2	GLN 547
L	ALA 2	GLN 547

There are147 helices in PDB entry 8CYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	34	Right-handed alpha
Helix 2	AA2	B	44	100	Right-handed alpha
Helix 3	AA3	B	105	130	Right-handed alpha
Helix 4	AA4	B	459	507	Right-handed alpha
Helix 5	AA5	B	510	538	Right-handed alpha
Helix 6	AA6	B	540	547	Right-handed alpha
Helix 7	AA7	A	8	34	Right-handed alpha
Helix 8	AA8	A	44	100	Right-handed alpha
Helix 9	AA9	A	105	130	Right-handed alpha
Helix 10	AB1	A	164	169	Right-handed alpha
Helix 11	AB2	A	459	507	Right-handed alpha
Helix 12	AB3	A	510	538	Right-handed alpha
Helix 13	AB4	A	540	547	Right-handed alpha
Helix 14	AB5	M	8	34	Right-handed alpha
Helix 15	AB6	M	45	100	Right-handed alpha
Helix 16	AB7	M	105	130	Right-handed alpha
Helix 17	AB8	M	164	169	Right-handed alpha
Helix 18	AB9	M	459	507	Right-handed alpha
Helix 19	AC1	M	510	538	Right-handed alpha
Helix 20	AC2	M	539	547	Right-handed alpha
Helix 21	AC3	C	8	34	Right-handed alpha
Helix 22	AC4	C	45	100	Right-handed alpha
Helix 23	AC5	C	105	130	Right-handed alpha
Helix 24	AC6	C	459	507	Right-handed alpha
Helix 25	AC7	C	510	538	Right-handed alpha
Helix 26	AC8	C	541	547	Right-handed alpha
Helix 27	AC9	N	8	34	Right-handed alpha
Helix 28	AD1	N	44	101	Right-handed alpha
Helix 29	AD2	N	105	130	Right-handed alpha
Helix 30	AD3	N	164	169	Right-handed alpha
Helix 31	AD4	N	459	507	Right-handed alpha
Helix 32	AD5	N	510	537	Right-handed alpha
Helix 33	AD6	N	538	540	Right-handed 310
Helix 34	AD7	N	541	547	Right-handed alpha
Helix 35	AD8	D	8	34	Right-handed alpha
Helix 36	AD9	D	44	101	Right-handed alpha
Helix 37	AE1	D	105	130	Right-handed alpha
Helix 38	AE2	D	459	507	Right-handed alpha
Helix 39	AE3	D	510	537	Right-handed alpha
Helix 40	AE4	D	540	547	Right-handed alpha
Helix 41	AE5	O	8	34	Right-handed alpha
Helix 42	AE6	O	44	101	Right-handed alpha
Helix 43	AE7	O	105	130	Right-handed alpha
Helix 44	AE8	O	459	507	Right-handed alpha
Helix 45	AE9	O	510	538	Right-handed alpha
Helix 46	AF1	O	539	547	Right-handed alpha
Helix 47	AF2	E	8	34	Right-handed alpha
Helix 48	AF3	E	44	100	Right-handed alpha
Helix 49	AF4	E	105	130	Right-handed alpha
Helix 50	AF5	E	164	169	Right-handed alpha
Helix 51	AF6	E	459	507	Right-handed alpha
Helix 52	AF7	E	510	538	Right-handed alpha
Helix 53	AF8	E	540	547	Right-handed alpha
Helix 54	AF9	P	8	34	Right-handed alpha
Helix 55	AG1	P	44	101	Right-handed alpha
Helix 56	AG2	P	105	130	Right-handed alpha
Helix 57	AG3	P	459	507	Right-handed alpha
Helix 58	AG4	P	510	536	Right-handed alpha
Helix 59	AG5	P	539	547	Right-handed alpha
Helix 60	AG6	F	8	34	Right-handed alpha
Helix 61	AG7	F	45	100	Right-handed alpha
Helix 62	AG8	F	105	130	Right-handed alpha
Helix 63	AG9	F	164	169	Right-handed alpha
Helix 64	AH1	F	459	507	Right-handed alpha
Helix 65	AH2	F	510	536	Right-handed alpha
Helix 66	AH3	F	539	547	Right-handed alpha
Helix 67	AH4	Q	8	34	Right-handed alpha
Helix 68	AH5	Q	44	101	Right-handed alpha
Helix 69	AH6	Q	105	130	Right-handed alpha
Helix 70	AH7	Q	164	169	Right-handed alpha
Helix 71	AH8	Q	459	507	Right-handed alpha
Helix 72	AH9	Q	510	536	Right-handed alpha
Helix 73	AI1	Q	537	539	Right-handed 310
Helix 74	AI2	Q	540	547	Right-handed alpha
Helix 75	AI3	G	8	34	Right-handed alpha
Helix 76	AI4	G	44	101	Right-handed alpha
Helix 77	AI5	G	105	130	Right-handed alpha
Helix 78	AI6	G	459	507	Right-handed alpha
Helix 79	AI7	G	510	536	Right-handed alpha
Helix 80	AI8	G	537	540	Right-handed 310
Helix 81	AI9	G	541	547	Right-handed alpha
Helix 82	AJ1	R	8	34	Right-handed alpha
Helix 83	AJ2	R	44	101	Right-handed alpha
Helix 84	AJ3	R	105	130	Right-handed alpha
Helix 85	AJ4	R	164	169	Right-handed alpha
Helix 86	AJ5	R	459	507	Right-handed alpha
Helix 87	AJ6	R	510	537	Right-handed alpha
Helix 88	AJ7	R	540	547	Right-handed alpha
Helix 89	AJ8	H	8	34	Right-handed alpha
Helix 90	AJ9	H	44	101	Right-handed alpha
Helix 91	AK1	H	105	130	Right-handed alpha
Helix 92	AK2	H	164	169	Right-handed alpha
Helix 93	AK3	H	459	507	Right-handed alpha
Helix 94	AK4	H	510	536	Right-handed alpha
Helix 95	AK5	H	537	540	Right-handed 310
Helix 96	AK6	H	541	547	Right-handed alpha
Helix 97	AK7	S	8	34	Right-handed alpha
Helix 98	AK8	S	44	101	Right-handed alpha
Helix 99	AK9	S	105	130	Right-handed alpha
Helix 100	AL1	S	164	169	Right-handed alpha
Helix 101	AL2	S	459	507	Right-handed alpha
Helix 102	AL3	S	510	538	Right-handed alpha
Helix 103	AL4	S	541	547	Right-handed alpha
Helix 104	AL5	I	8	34	Right-handed alpha
Helix 105	AL6	I	44	100	Right-handed alpha
Helix 106	AL7	I	105	130	Right-handed alpha
Helix 107	AL8	I	164	169	Right-handed alpha
Helix 108	AL9	I	459	507	Right-handed alpha
Helix 109	AM1	I	510	537	Right-handed alpha
Helix 110	AM2	I	540	547	Right-handed alpha
Helix 111	AM3	T	8	34	Right-handed alpha
Helix 112	AM4	T	45	101	Right-handed alpha
Helix 113	AM5	T	105	130	Right-handed alpha
Helix 114	AM6	T	459	507	Right-handed alpha
Helix 115	AM7	T	510	538	Right-handed alpha
Helix 116	AM8	T	540	547	Right-handed alpha
Helix 117	AM9	J	8	34	Right-handed alpha
Helix 118	AN1	J	44	100	Right-handed alpha
Helix 119	AN2	J	105	130	Right-handed alpha
Helix 120	AN3	J	461	507	Right-handed alpha
Helix 121	AN4	J	510	537	Right-handed alpha
Helix 122	AN5	J	540	547	Right-handed alpha
Helix 123	AN6	U	8	13	Right-handed alpha
Helix 124	AN7	U	13	34	Right-handed alpha
Helix 125	AN8	U	44	101	Right-handed alpha
Helix 126	AN9	U	105	130	Right-handed alpha
Helix 127	AO1	U	459	507	Right-handed alpha
Helix 128	AO2	U	510	538	Right-handed alpha
Helix 129	AO3	U	540	547	Right-handed alpha
Helix 130	AO4	K	8	34	Right-handed alpha
Helix 131	AO5	K	44	101	Right-handed alpha
Helix 132	AO6	K	105	130	Right-handed alpha
Helix 133	AO7	K	459	507	Right-handed alpha
Helix 134	AO8	K	510	537	Right-handed alpha
Helix 135	AO9	K	540	547	Right-handed alpha
Helix 136	AP1	V	8	34	Right-handed alpha
Helix 137	AP2	V	44	100	Right-handed alpha
Helix 138	AP3	V	105	130	Right-handed alpha
Helix 139	AP4	V	459	507	Right-handed alpha
Helix 140	AP5	V	510	536	Right-handed alpha
Helix 141	AP6	V	539	547	Right-handed alpha
Helix 142	AP7	L	8	34	Right-handed alpha
Helix 143	AP8	L	44	101	Right-handed alpha
Helix 144	AP9	L	105	130	Right-handed alpha
Helix 145	AQ1	L	459	507	Right-handed alpha
Helix 146	AQ2	L	510	537	Right-handed alpha
Helix 147	AQ3	L	540	547	Right-handed alpha

There are 25 sheets in PDB entry 8CYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	135	136	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	147	first strand
Strand 2	B	155	160	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	155	160	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	142	147	first strand
Strand 2	M	155	160	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	135	136	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	156	160	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	142	147	first strand
Strand 2	N	155	160	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	146	first strand
Strand 2	D	156	160	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	142	147	first strand
Strand 2	O	155	160	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	147	first strand
Strand 2	E	155	160	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	143	147	first strand
Strand 2	P	155	159	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	145	first strand
Strand 2	F	157	160	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	143	147	first strand
Strand 2	Q	155	159	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	147	first strand
Strand 2	G	155	160	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	142	147	first strand
Strand 2	R	155	160	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	147	first strand
Strand 2	H	155	160	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	142	147	first strand
Strand 2	S	155	160	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	142	147	first strand
Strand 2	I	155	160	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	142	147	first strand
Strand 2	T	155	160	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	142	147	first strand
Strand 2	J	155	160	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	131	132	first strand
Strand 2	U	135	136	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	142	146	first strand
Strand 2	U	156	160	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	142	147	first strand
Strand 2	K	155	160	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	142	147	first strand
Strand 2	V	155	160	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	142	146	first strand
Strand 2	L	156	160	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CYE