Analysis of interatomic Contacts of Structural Units in PDB entry:
8CYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CYK entry

There are 2 chains in PDB entry 8CYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 5SER 133
A
 GLY 3SER 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8CYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
14 28Right-handed alpha
Helix 2
AA2
B
41 59Right-handed alpha
Helix 3
AA3
B
62 74Right-handed alpha
Helix 4
AA4
B
114 131Right-handed alpha
Helix 5
AA5
A
14 28Right-handed alpha
Helix 6
AA6
A
41 59Right-handed alpha
Helix 7
AA7
A
62 74Right-handed alpha
Helix 8
AA8
A
114 133Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8CYK.

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
B
104 112anti-parallel
Strand 3
B
91 100anti-parallel
Strand 4
B
78 88anti-parallel
Strand 5
B
33 39anti-parallel
Strand 6
B
6 11parallel
Strand 7
A
104 111anti-parallel
Strand 8
A
91 100anti-parallel
Strand 9
A
78 88anti-parallel
Strand 10
A
33 39anti-parallel
Strand 11
A
8 11parallel
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