Analysis of interatomic Contacts of Structural Units in PDB entry:
8CZ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CZ8 entry

There are 6 chains in PDB entry 8CZ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 1	SER 246
M	THR 442	GLY 589
E	THR 442	GLY 589
D	ASP 1	SER 241
A	ILE 2	SER 246
B	ASP 1	SER 241

There are 46 helices in PDB entry 8CZ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	81	85	Right-handed 310
Helix 2	AA2	C	189	192	Right-handed 310
Helix 3	AA3	C	201	203	Right-handed 310
Helix 4	AA4	C	214	218	Right-handed 310
Helix 5	AA5	M	448	452	Right-handed 310
Helix 6	AA6	M	455	460	Right-handed 310
Helix 7	AA7	M	461	468	Right-handed 310
Helix 8	AA8	M	469	474	Right-handed 310
Helix 9	AA9	M	477	493	Right-handed alpha
Helix 10	AB1	M	496	505	Right-handed alpha
Helix 11	AB2	M	506	511	Right-handed 310
Helix 12	AB3	M	512	522	Right-handed alpha
Helix 13	AB4	M	527	532	Right-handed alpha
Helix 14	AB5	M	535	540	Right-handed alpha
Helix 15	AB6	M	543	552	Right-handed alpha
Helix 16	AB7	M	553	562	Right-handed 310
Helix 17	AB8	M	564	572	Right-handed alpha
Helix 18	AB9	M	575	580	Right-handed alpha
Helix 19	AC1	M	581	583	Right-handed 310
Helix 20	AC2	E	445	452	Right-handed 310
Helix 21	AC3	E	455	460	Right-handed 310
Helix 22	AC4	E	461	468	Right-handed 310
Helix 23	AC5	E	469	474	Right-handed 310
Helix 24	AC6	E	477	493	Right-handed alpha
Helix 25	AC7	E	496	505	Right-handed alpha
Helix 26	AC8	E	506	511	Right-handed 310
Helix 27	AC9	E	512	521	Right-handed alpha
Helix 28	AD1	E	527	532	Right-handed alpha
Helix 29	AD2	E	535	540	Right-handed alpha
Helix 30	AD3	E	543	552	Right-handed alpha
Helix 31	AD4	E	553	562	Right-handed 310
Helix 32	AD5	E	564	572	Right-handed alpha
Helix 33	AD6	E	575	580	Right-handed alpha
Helix 34	AD7	E	581	583	Right-handed 310
Helix 35	AD8	D	79	83	Right-handed 310
Helix 36	AD9	D	151	155	Right-handed 310
Helix 37	AE1	D	197	199	Right-handed 310
Helix 38	AE2	D	210	214	Right-handed 310
Helix 39	AE3	A	81	85	Right-handed 310
Helix 40	AE4	A	189	192	Right-handed 310
Helix 41	AE5	A	201	203	Right-handed 310
Helix 42	AE6	A	214	218	Right-handed 310
Helix 43	AE7	B	79	83	Right-handed 310
Helix 44	AE8	B	151	155	Right-handed 310
Helix 45	AE9	B	197	199	Right-handed 310
Helix 46	AF1	B	210	214	Right-handed 310

There are 22 sheets in PDB entry 8CZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	99	103	parallel
Strand 3	C	86	94	anti-parallel
Strand 4	C	106	110	anti-parallel
Strand 5	C	9	12	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	99	103	parallel
Strand 3	C	86	94	anti-parallel
Strand 4	C	36	40	anti-parallel
Strand 5	C	47	50	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	72	77	anti-parallel
Strand 3	C	64	69	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	145	152	anti-parallel
Strand 3	C	205	210	anti-parallel
Strand 4	C	196	200	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	139	first strand
Strand 2	C	241	245	parallel
Strand 3	C	219	227	anti-parallel
Strand 4	C	160	166	anti-parallel
Strand 5	C	173	179	anti-parallel
Strand 6	C	184	187	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	139	first strand
Strand 2	C	241	245	parallel
Strand 3	C	219	227	anti-parallel
Strand 4	C	233	237	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	45	49	anti-parallel
Strand 3	D	33	38	anti-parallel
Strand 4	D	84	90	anti-parallel
Strand 5	D	102	105	anti-parallel
Strand 6	D	10	12	parallel
Strand 7	B	10	12	anti-parallel
Strand 8	B	102	105	parallel
Strand 9	B	84	90	anti-parallel
Strand 10	B	33	38	anti-parallel
Strand 11	B	45	49	anti-parallel
Strand 12	B	53	54	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	84	90	anti-parallel
Strand 3	D	102	105	anti-parallel
Strand 4	D	10	12	parallel
Strand 5	B	10	12	anti-parallel
Strand 6	B	102	105	parallel
Strand 7	B	84	90	anti-parallel
Strand 8	B	97	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	141	148	anti-parallel
Strand 3	D	201	206	anti-parallel
Strand 4	D	191	196	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	236	240	parallel
Strand 3	D	215	222	anti-parallel
Strand 4	D	157	162	anti-parallel
Strand 5	D	168	174	anti-parallel
Strand 6	D	181	183	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	236	240	parallel
Strand 3	D	215	222	anti-parallel
Strand 4	D	229	232	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	106	110	parallel
Strand 3	A	86	94	anti-parallel
Strand 4	A	36	40	anti-parallel
Strand 5	A	47	50	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	106	110	parallel
Strand 3	A	86	94	anti-parallel
Strand 4	A	99	102	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	23	first strand
Strand 2	A	72	77	anti-parallel
Strand 3	A	64	69	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	145	152	anti-parallel
Strand 3	A	205	210	anti-parallel
Strand 4	A	196	200	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	241	245	parallel
Strand 3	A	219	227	anti-parallel
Strand 4	A	160	166	anti-parallel
Strand 5	A	173	179	anti-parallel
Strand 6	A	184	187	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	241	245	parallel
Strand 3	A	219	227	anti-parallel
Strand 4	A	233	237	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	130	first strand
Strand 2	B	141	148	anti-parallel
Strand 3	B	201	206	anti-parallel
Strand 4	B	191	196	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	236	240	parallel
Strand 3	B	215	222	anti-parallel
Strand 4	B	157	162	anti-parallel
Strand 5	B	169	174	anti-parallel
Strand 6	B	181	183	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	236	240	parallel
Strand 3	B	215	222	anti-parallel
Strand 4	B	229	232	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CZ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CZ8