Analysis of interatomic Contacts of Structural Units in PDB entry:
8CZC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CZC entry

There is 1 chain in PDB entry 8CZC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 628ASN 942
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 8CZC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
647 654Right-handed alpha
Helix 2
AA2
B
654 673Right-handed alpha
Helix 3
AA3
B
675 681Right-handed alpha
Helix 4
AA4
B
691 713Right-handed alpha
Helix 5
AA5
B
725 734Right-handed alpha
Helix 6
AA6
B
738 757Right-handed alpha
Helix 7
AA7
B
769 777Right-handed alpha
Helix 8
AA8
B
799 813Right-handed alpha
Helix 9
AA9
B
829 833Right-handed 310
Helix 10
AB1
B
834 842Right-handed alpha
Helix 11
AB2
B
869 879Right-handed alpha
Helix 12
AB3
B
882 893Right-handed alpha
Helix 13
AB4
B
908 912Right-handed 310
Helix 14
AB5
B
928 941Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8CZC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
861 863first strand
Strand 2
B
854 856anti-parallel
Strand 3
B
719 722parallel
Strand 4
B
631 636parallel
Strand 5
B
896 901parallel
Strand 6
B
917 919parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
783 790first strand
Strand 2
B
793 798anti-parallel
Strand 3
B
762 766anti-parallel
Strand 4
B
817 820anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il