Analysis of interatomic Contacts of Structural Units in PDB entry:
8D06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D06 entry

There are 12 chains in PDB entry 8D06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5ILE 68
B
 GLY 3GLY 69
C
 GLY 3GLY 69
D
 LYS 4ILE 68
E
 GLY 3ILE 68
F
 GLY 3ILE 68
H
 ARG 5ILE 68
G
 ILE 6ILE 68
I
 ARG 5LYS 67
L
 GLY 3GLY 69
K
 GLY 3ILE 68
J
 LYS 4GLY 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8D06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 38Right-handed alpha
Helix 2
AA2
A
44 67Right-handed alpha
Helix 3
AA3
B
4 40Right-handed alpha
Helix 4
AA4
B
44 68Right-handed alpha
Helix 5
AA5
C
4 40Right-handed alpha
Helix 6
AA6
C
44 67Right-handed alpha
Helix 7
AA7
D
5 39Right-handed alpha
Helix 8
AA8
D
44 67Right-handed alpha
Helix 9
AA9
E
4 40Right-handed alpha
Helix 10
AB1
E
44 67Right-handed alpha
Helix 11
AB2
F
4 39Right-handed alpha
Helix 12
AB3
F
44 67Right-handed alpha
Helix 13
AB4
H
6 40Right-handed alpha
Helix 14
AB5
H
44 67Right-handed alpha
Helix 15
AB6
G
7 39Right-handed alpha
Helix 16
AB7
G
47 67Right-handed alpha
Helix 17
AB8
I
6 40Right-handed alpha
Helix 18
AB9
I
47 67Right-handed alpha
Helix 19
AC1
L
4 39Right-handed alpha
Helix 20
AC2
L
44 68Right-handed alpha
Helix 21
AC3
K
5 39Right-handed alpha
Helix 22
AC4
K
44 67Right-handed alpha
Helix 23
AC5
J
5 39Right-handed alpha
Helix 24
AC6
J
44 67Right-handed alpha
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There are no sheets in PDB entry 8D06
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il