Analysis of interatomic Contacts of Structural Units in PDB entry:
8D0B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D0B entry

There are 8 chains in PDB entry 8D0B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 9	SER 1204
B	ARG 7	PHE 368
C	LEU 3	GLN 123
D	GLU 2	PHE 420
E	ASP 16	SER 256
F	VAL 324	SER 1462
G	HIS 143	ILE 598
H	T 1	G 15

There are117 helices in PDB entry 8D0B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	27	Right-handed alpha
Helix 2	AA2	A	37	53	Right-handed alpha
Helix 3	AA3	A	69	77	Right-handed alpha
Helix 4	AA4	A	88	100	Right-handed alpha
Helix 5	AA5	A	150	154	Right-handed 310
Helix 6	AA6	A	205	215	Right-handed alpha
Helix 7	AA7	A	266	274	Right-handed 310
Helix 8	AA8	A	441	445	Right-handed 310
Helix 9	AA9	A	449	459	Right-handed alpha
Helix 10	AB1	A	463	482	Right-handed alpha
Helix 11	AB2	A	487	492	Right-handed alpha
Helix 12	AB3	A	501	515	Right-handed alpha
Helix 13	AB4	A	523	529	Right-handed alpha
Helix 14	AB5	A	551	566	Right-handed alpha
Helix 15	AB6	A	568	573	Right-handed alpha
Helix 16	AB7	A	576	581	Right-handed 310
Helix 17	AB8	A	582	590	Right-handed alpha
Helix 18	AB9	A	644	648	Right-handed 310
Helix 19	AC1	A	801	811	Right-handed 310
Helix 20	AC2	A	842	846	Right-handed 310
Helix 21	AC3	A	868	873	Right-handed alpha
Helix 22	AC4	A	882	887	Right-handed alpha
Helix 23	AC5	A	951	955	Right-handed 310
Helix 24	AC6	A	1013	1017	Right-handed 310
Helix 25	AC7	A	1090	1098	Right-handed alpha
Helix 26	AC8	A	1100	1112	Right-handed alpha
Helix 27	AC9	A	1137	1148	Right-handed alpha
Helix 28	AD1	B	16	25	Right-handed 310
Helix 29	AD2	B	30	37	Right-handed alpha
Helix 30	AD3	B	103	124	Right-handed alpha
Helix 31	AD4	B	161	177	Right-handed alpha
Helix 32	AD5	B	200	220	Right-handed alpha
Helix 33	AD6	B	226	232	Right-handed alpha
Helix 34	AD7	B	232	240	Right-handed alpha
Helix 35	AD8	B	241	247	Right-handed alpha
Helix 36	AD9	B	254	278	Right-handed alpha
Helix 37	AE1	B	297	310	Right-handed alpha
Helix 38	AE2	B	324	335	Right-handed alpha
Helix 39	AE3	B	340	354	Right-handed alpha
Helix 40	AE4	C	11	16	Right-handed alpha
Helix 41	AE5	C	101	121	Right-handed alpha
Helix 42	AE6	D	5	7	Right-handed 310
Helix 43	AE7	D	8	20	Right-handed alpha
Helix 44	AE8	D	22	30	Right-handed alpha
Helix 45	AE9	D	31	35	Right-handed 310
Helix 46	AF1	D	39	41	Right-handed 310
Helix 47	AF2	D	62	74	Right-handed alpha
Helix 48	AF3	D	87	91	Right-handed 310
Helix 49	AF4	D	111	115	Right-handed 310
Helix 50	AF5	D	131	149	Right-handed alpha
Helix 51	AF6	D	178	189	Right-handed alpha
Helix 52	AF7	D	209	228	Right-handed alpha
Helix 53	AF8	D	236	244	Right-handed alpha
Helix 54	AF9	D	245	247	Right-handed 310
Helix 55	AG1	D	248	250	Right-handed 310
Helix 56	AG2	D	251	262	Right-handed alpha
Helix 57	AG3	D	264	281	Right-handed alpha
Helix 58	AG4	D	291	302	Right-handed alpha
Helix 59	AG5	D	306	312	Right-handed alpha
Helix 60	AG6	D	343	347	Right-handed 310
Helix 61	AG7	D	349	368	Right-handed alpha
Helix 62	AG8	D	374	386	Right-handed alpha
Helix 63	AG9	D	388	418	Right-handed alpha
Helix 64	AH1	E	17	22	Right-handed alpha
Helix 65	AH2	E	38	63	Right-handed alpha
Helix 66	AH3	E	68	81	Right-handed alpha
Helix 67	AH4	E	92	110	Right-handed alpha
Helix 68	AH5	E	113	134	Right-handed alpha
Helix 69	AH6	E	136	147	Right-handed alpha
Helix 70	AH7	E	155	162	Right-handed alpha
Helix 71	AH8	E	162	170	Right-handed alpha
Helix 72	AH9	E	191	197	Right-handed alpha
Helix 73	AI1	E	210	236	Right-handed alpha
Helix 74	AI2	E	237	241	Right-handed 310
Helix 75	AI3	E	246	255	Right-handed alpha
Helix 76	AI4	F	409	426	Right-handed alpha
Helix 77	AI5	F	482	491	Right-handed alpha
Helix 78	AI6	F	522	524	Right-handed 310
Helix 79	AI7	F	597	606	Right-handed alpha
Helix 80	AI8	F	614	630	Right-handed alpha
Helix 81	AI9	F	642	655	Right-handed alpha
Helix 82	AJ1	F	658	663	Right-handed 310
Helix 83	AJ2	F	678	684	Right-handed alpha
Helix 84	AJ3	F	693	701	Right-handed alpha
Helix 85	AJ4	F	707	715	Right-handed alpha
Helix 86	AJ5	F	724	731	Right-handed alpha
Helix 87	AJ6	F	734	759	Right-handed alpha
Helix 88	AJ7	F	760	773	Right-handed alpha
Helix 89	AJ8	F	775	780	Right-handed alpha
Helix 90	AJ9	F	783	798	Right-handed alpha
Helix 91	AK1	F	863	873	Right-handed alpha
Helix 92	AK2	F	909	930	Right-handed alpha
Helix 93	AK3	F	935	955	Right-handed alpha
Helix 94	AK4	F	955	962	Right-handed alpha
Helix 95	AK5	F	969	994	Right-handed alpha
Helix 96	AK6	F	1014	1033	Right-handed alpha
Helix 97	AK7	F	1268	1273	Right-handed alpha
Helix 98	AK8	F	1318	1321	Right-handed 310
Helix 99	AK9	F	1322	1343	Right-handed alpha
Helix 100	AL1	F	1384	1398	Right-handed alpha
Helix 101	AL2	F	1400	1407	Right-handed alpha
Helix 102	AL3	F	1410	1421	Right-handed alpha
Helix 103	AL4	F	1423	1442	Right-handed alpha
Helix 104	AL5	F	1443	1448	Right-handed 310
Helix 105	AL6	F	1451	1455	Right-handed alpha
Helix 106	AL7	G	147	152	Right-handed alpha
Helix 107	AL8	G	158	163	Right-handed alpha
Helix 108	AL9	G	212	236	Right-handed alpha
Helix 109	AM1	G	275	280	Right-handed alpha
Helix 110	AM2	G	331	337	Right-handed alpha
Helix 111	AM3	G	357	371	Right-handed alpha
Helix 112	AM4	G	386	391	Right-handed alpha
Helix 113	AM5	G	397	414	Right-handed alpha
Helix 114	AM6	G	446	451	Right-handed alpha
Helix 115	AM7	G	475	483	Right-handed alpha
Helix 116	AM8	G	493	505	Right-handed alpha
Helix 117	AM9	G	521	529	Right-handed alpha

There are 37 sheets in PDB entry 8D0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	111	112	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	81	84	parallel
Strand 3	A	162	166	anti-parallel
Strand 4	A	178	180	anti-parallel
Strand 5	A	141	145	parallel
Strand 6	A	134	136	anti-parallel
Strand 7	A	114	118	anti-parallel
Strand 8	A	157	159	anti-parallel
Strand 9	A	186	187	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	243	250	anti-parallel
Strand 3	A	224	233	anti-parallel
Strand 4	A	280	290	anti-parallel
Strand 5	A	307	309	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	243	250	anti-parallel
Strand 3	A	258	263	anti-parallel
Strand 4	A	297	301	parallel
Strand 5	A	280	290	anti-parallel
Strand 6	A	307	309	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	539	540	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	406	409	anti-parallel
Strand 3	A	420	421	anti-parallel
Strand 4	A	379	382	parallel
Strand 5	A	372	375	anti-parallel
Strand 6	A	359	367	anti-parallel
Strand 7	A	399	404	anti-parallel
Strand 8	A	428	433	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	548	first strand
Strand 2	A	605	606	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	597	first strand
Strand 2	A	658	667	anti-parallel
Strand 3	A	681	693	anti-parallel
Strand 4	A	629	636	parallel
Strand 5	A	640	641	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	597	first strand
Strand 2	A	658	667	anti-parallel
Strand 3	A	681	693	anti-parallel
Strand 4	A	629	636	parallel
Strand 5	A	621	624	anti-parallel
Strand 6	A	608	614	anti-parallel
Strand 7	A	651	654	anti-parallel
Strand 8	A	697	700	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	744	first strand
Strand 2	A	760	769	anti-parallel
Strand 3	A	729	738	anti-parallel
Strand 4	A	796	800	first strand

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	781	first strand
Strand 2	A	774	777	anti-parallel
Strand 3	A	729	738	anti-parallel
Strand 4	A	760	769	anti-parallel
Strand 5	A	816	819	first strand
Strand 6	A	860	862	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	996	first strand
Strand 2	A	966	976	anti-parallel
Strand 3	A	982	985	anti-parallel
Strand 4	A	945	950	parallel
Strand 5	A	928	935	anti-parallel
Strand 6	A	896	908	anti-parallel
Strand 7	A	966	976	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1024	1027	first strand
Strand 2	A	1156	1161	anti-parallel
Strand 3	A	1194	1202	anti-parallel
Strand 4	A	1083	1089	parallel
Strand 5	A	1067	1078	anti-parallel
Strand 6	A	1030	1043	anti-parallel
Strand 7	A	1117	1120	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1175	1177	first strand
Strand 2	A	1188	1190	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	56	68	parallel
Strand 3	B	131	140	anti-parallel
Strand 4	B	145	154	anti-parallel
Strand 5	B	83	89	parallel
Strand 6	B	72	78	anti-parallel
Strand 7	B	56	68	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	47	49	anti-parallel
Strand 3	B	52	54	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	290	293	anti-parallel
Strand 3	B	280	281	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	323	first strand
Strand 2	B	364	365	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	25	36	parallel
Strand 3	C	72	81	anti-parallel
Strand 4	C	87	96	anti-parallel
Strand 5	C	51	58	parallel
Strand 6	C	41	48	anti-parallel
Strand 7	C	25	36	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	58	first strand
Strand 2	D	43	49	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	101	103	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	58	first strand
Strand 2	D	43	49	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	317	318	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	110	first strand
Strand 2	D	165	169	anti-parallel
Strand 3	D	155	159	anti-parallel
Strand 4	D	333	334	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	37	first strand
Strand 2	F	1449	1450	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	187	first strand
Strand 2	E	206	209	anti-parallel
Strand 3	E	201	203	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	333	first strand
Strand 2	F	339	350	anti-parallel
Strand 3	F	359	367	anti-parallel
Strand 4	F	372	380	anti-parallel
Strand 5	F	516	520	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	333	first strand
Strand 2	F	339	350	anti-parallel
Strand 3	F	498	502	anti-parallel
Strand 4	F	526	529	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	431	438	first strand
Strand 2	F	449	458	anti-parallel
Strand 3	F	384	391	anti-parallel
Strand 4	F	473	477	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	394	396	first strand
Strand 2	F	403	407	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	609	611	first strand
Strand 2	F	581	586	parallel
Strand 3	F	555	568	anti-parallel
Strand 4	F	537	548	anti-parallel
Strand 5	F	633	636	parallel
Strand 6	F	689	692	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	997	1002	first strand
Strand 2	F	1005	1009	anti-parallel
Strand 3	F	856	861	anti-parallel
Strand 4	F	1038	1049	anti-parallel
Strand 5	F	1055	1062	anti-parallel
Strand 6	F	1068	1075	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1279	1282	first strand
Strand 2	F	1289	1292	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1356	1357	first strand
Strand 2	F	1346	1348	anti-parallel
Strand 3	F	1379	1381	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	175	first strand
Strand 2	G	590	597	anti-parallel
Strand 3	G	570	577	anti-parallel
Strand 4	G	339	345	anti-parallel
Strand 5	G	374	378	parallel
Strand 6	G	419	423	parallel
Strand 7	G	453	455	parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	193	196	first strand
Strand 2	G	460	464	anti-parallel
Strand 3	G	467	471	anti-parallel
Strand 4	G	537	539	parallel
Strand 5	G	554	558	parallel
Strand 6	G	547	551	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	250	259	first strand
Strand 2	G	270	274	anti-parallel
Strand 3	G	283	287	anti-parallel
Strand 4	G	314	319	parallel
Strand 5	G	301	307	anti-parallel
Strand 6	G	250	259	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	294	296	first strand
Strand 2	G	485	487	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	563	564	first strand
Strand 2	G	567	568	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D0B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D0B