Analysis of interatomic Contacts of Structural Units in PDB entry:
8D0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D0Q entry

There is 1 chain in PDB entry 8D0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 63ASN 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8D0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 75Right-handed 310
Helix 2
AA2
A
81 87Right-handed alpha
Helix 3
AA3
A
96 103Right-handed 310
Helix 4
AA4
A
111 113Right-handed 310
Helix 5
AA5
A
138 142Right-handed 310
Helix 6
AA6
A
200 210Right-handed alpha
Helix 7
AA7
A
219 223Right-handed 310
Helix 8
AA8
A
227 229Right-handed 310
Helix 9
AA9
A
230 237Right-handed alpha
Helix 10
AB1
A
254 264Right-handed alpha
Helix 11
AB2
A
273 278Right-handed alpha
Helix 12
AB3
A
282 286Right-handed 310
Helix 13
AB4
A
290 292Right-handed 310
Helix 14
AB5
A
294 307Right-handed alpha
Helix 15
AB6
A
308 315Right-handed alpha
Helix 16
AB7
A
316 320Right-handed 310
Helix 17
AB8
A
330 344Right-handed alpha
Helix 18
AB9
A
352 359Right-handed alpha
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There are 3 sheets in PDB entry 8D0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
64 68parallel
Strand 3
A
105 109parallel
Strand 4
A
130 134parallel
Strand 5
A
154 157parallel
Strand 6
A
164 165parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
322 325anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 218first strand
Strand 2
A
187 192parallel
Strand 3
A
238 244parallel
Strand 4
A
266 270parallel
Strand 5
A
287 288parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il