Analysis of interatomic Contacts of Structural Units in PDB entry:
8D0Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D0Y entry

There are 6 chains in PDB entry 8D0Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 1	THR 110
E	VAL 3	SER 110
H	GLN 1	LYS 213
L	ASP 1	GLU 213
G	GLU 32	GLY 507
B	VAL 518	LEU 663

There are 21 helices in PDB entry 8D0Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	61	64	Right-handed 310
Helix 2	AA2	D	83	86	Right-handed 310
Helix 3	AA3	E	79	83	Right-handed 310
Helix 4	AA4	H	83	87	Right-handed 310
Helix 5	AA5	H	155	157	Right-handed 310
Helix 6	AA6	H	184	188	Right-handed 310
Helix 7	AA7	L	121	127	Right-handed alpha
Helix 8	AA8	L	183	188	Right-handed alpha
Helix 9	AA9	G	99	117	Right-handed alpha
Helix 10	AB1	G	177	179	Right-handed 310
Helix 11	AB2	G	335	354	Right-handed alpha
Helix 12	AB3	G	475	484	Right-handed alpha
Helix 13	AB4	B	523	528	Right-handed 310
Helix 14	AB5	B	529	536	Right-handed alpha
Helix 15	AB6	B	536	543	Right-handed alpha
Helix 16	AB7	B	547	554	Right-handed alpha
Helix 17	AB8	B	560	565	Right-handed alpha
Helix 18	AB9	B	569	596	Right-handed alpha
Helix 19	AC1	B	618	624	Right-handed alpha
Helix 20	AC2	B	627	636	Right-handed alpha
Helix 21	AC3	B	638	662	Right-handed alpha

There are 22 sheets in PDB entry 8D0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	88	95	anti-parallel
Strand 5	D	100	103	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	72	first strand
Strand 2	D	73	75	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	71	75	anti-parallel
Strand 4	E	62	66	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	48	first strand
Strand 2	E	32	37	anti-parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	123	first strand
Strand 2	H	136	144	anti-parallel
Strand 3	H	175	182	anti-parallel
Strand 4	H	162	164	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	153	first strand
Strand 2	H	194	199	anti-parallel
Strand 3	H	204	209	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	164	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	498	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	86	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	237	239	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	176	first strand
Strand 2	G	155	159	anti-parallel
Strand 3	G	129	132	anti-parallel
Strand 4	G	190	193	anti-parallel
Strand 5	G	181	185	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	203	first strand
Strand 2	G	432	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	441	456	anti-parallel
Strand 3	G	284	302	anti-parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	413	421	anti-parallel
Strand 6	G	381	386	anti-parallel
Strand 7	G	373	378	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	302	anti-parallel
Strand 3	G	441	456	anti-parallel
Strand 4	G	468	469	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D0Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D0Y