Analysis of interatomic Contacts of Structural Units in PDB entry:
8D15

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D15 entry

There are 14 chains in PDB entry 8D15 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	GLU 72
A	GLY 74	PHE 375
B	THR 5	GLU 72
B	GLY 74	PHE 375
C	THR 5	GLU 72
C	GLY 74	PHE 375
D	THR 5	GLU 72
D	GLY 74	PHE 375
E	THR 5	GLU 72
E	GLY 74	PHE 375
F	THR 5	GLU 72
F	GLY 74	PHE 375
G	THR 5	GLU 72
G	GLY 74	PHE 375

There are149 helices in PDB entry 8D15. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	60	Right-handed alpha
Helix 2	AA2	A	61	63	Right-handed 310
Helix 3	AA3	A	78	93	Right-handed alpha
Helix 4	AA4	A	97	101	Right-handed 310
Helix 5	AA5	A	112	126	Right-handed alpha
Helix 6	AA6	A	137	145	Right-handed alpha
Helix 7	AA7	A	172	175	Right-handed 310
Helix 8	AA8	A	181	193	Right-handed alpha
Helix 9	AA9	A	194	197	Right-handed 310
Helix 10	AB1	A	202	217	Right-handed alpha
Helix 11	AB2	A	222	233	Right-handed alpha
Helix 12	AB3	A	252	260	Right-handed alpha
Helix 13	AB4	A	261	268	Right-handed 310
Helix 14	AB5	A	273	284	Right-handed alpha
Helix 15	AB6	A	289	295	Right-handed alpha
Helix 16	AB7	A	301	306	Right-handed 310
Helix 17	AB8	A	308	321	Right-handed alpha
Helix 18	AB9	A	337	348	Right-handed alpha
Helix 19	AC1	A	349	355	Right-handed 310
Helix 20	AC2	A	359	366	Right-handed alpha
Helix 21	AC3	A	369	374	Right-handed alpha
Helix 22	AC4	B	55	61	Right-handed alpha
Helix 23	AC5	B	78	93	Right-handed alpha
Helix 24	AC6	B	97	101	Right-handed 310
Helix 25	AC7	B	112	126	Right-handed alpha
Helix 26	AC8	B	137	145	Right-handed alpha
Helix 27	AC9	B	181	193	Right-handed alpha
Helix 28	AD1	B	194	197	Right-handed 310
Helix 29	AD2	B	204	217	Right-handed alpha
Helix 30	AD3	B	222	233	Right-handed alpha
Helix 31	AD4	B	234	237	Right-handed 310
Helix 32	AD5	B	252	257	Right-handed alpha
Helix 33	AD6	B	258	262	Right-handed 310
Helix 34	AD7	B	263	268	Right-handed 310
Helix 35	AD8	B	273	284	Right-handed alpha
Helix 36	AD9	B	289	295	Right-handed alpha
Helix 37	AE1	B	301	306	Right-handed 310
Helix 38	AE2	B	308	319	Right-handed alpha
Helix 39	AE3	B	334	336	Right-handed 310
Helix 40	AE4	B	337	349	Right-handed alpha
Helix 41	AE5	B	350	356	Right-handed 310
Helix 42	AE6	B	359	366	Right-handed alpha
Helix 43	AE7	B	369	374	Right-handed alpha
Helix 44	AE8	C	55	61	Right-handed alpha
Helix 45	AE9	C	78	92	Right-handed alpha
Helix 46	AF1	C	97	101	Right-handed 310
Helix 47	AF2	C	112	126	Right-handed alpha
Helix 48	AF3	C	137	146	Right-handed alpha
Helix 49	AF4	C	172	175	Right-handed 310
Helix 50	AF5	C	181	194	Right-handed alpha
Helix 51	AF6	C	195	197	Right-handed 310
Helix 52	AF7	C	202	217	Right-handed alpha
Helix 53	AF8	C	222	233	Right-handed alpha
Helix 54	AF9	C	252	260	Right-handed alpha
Helix 55	AG1	C	273	285	Right-handed alpha
Helix 56	AG2	C	289	295	Right-handed alpha
Helix 57	AG3	C	301	306	Right-handed 310
Helix 58	AG4	C	308	319	Right-handed alpha
Helix 59	AG5	C	334	336	Right-handed 310
Helix 60	AG6	C	337	349	Right-handed alpha
Helix 61	AG7	C	350	355	Right-handed 310
Helix 62	AG8	C	359	366	Right-handed alpha
Helix 63	AG9	C	368	374	Right-handed alpha
Helix 64	AH1	D	55	60	Right-handed alpha
Helix 65	AH2	D	61	63	Right-handed 310
Helix 66	AH3	D	78	93	Right-handed alpha
Helix 67	AH4	D	97	101	Right-handed 310
Helix 68	AH5	D	112	126	Right-handed alpha
Helix 69	AH6	D	137	145	Right-handed alpha
Helix 70	AH7	D	181	193	Right-handed alpha
Helix 71	AH8	D	194	197	Right-handed 310
Helix 72	AH9	D	202	217	Right-handed alpha
Helix 73	AI1	D	222	233	Right-handed alpha
Helix 74	AI2	D	252	257	Right-handed alpha
Helix 75	AI3	D	258	261	Right-handed 310
Helix 76	AI4	D	273	284	Right-handed alpha
Helix 77	AI5	D	289	295	Right-handed alpha
Helix 78	AI6	D	302	306	Right-handed 310
Helix 79	AI7	D	308	321	Right-handed alpha
Helix 80	AI8	D	332	336	Right-handed 310
Helix 81	AI9	D	337	347	Right-handed alpha
Helix 82	AJ1	D	351	355	Right-handed 310
Helix 83	AJ2	D	359	366	Right-handed alpha
Helix 84	AJ3	D	369	374	Right-handed alpha
Helix 85	AJ4	E	55	60	Right-handed alpha
Helix 86	AJ5	E	61	63	Right-handed 310
Helix 87	AJ6	E	78	92	Right-handed alpha
Helix 88	AJ7	E	97	101	Right-handed 310
Helix 89	AJ8	E	112	126	Right-handed alpha
Helix 90	AJ9	E	137	145	Right-handed alpha
Helix 91	AK1	E	172	175	Right-handed 310
Helix 92	AK2	E	181	193	Right-handed alpha
Helix 93	AK3	E	194	197	Right-handed 310
Helix 94	AK4	E	204	217	Right-handed alpha
Helix 95	AK5	E	222	233	Right-handed alpha
Helix 96	AK6	E	252	257	Right-handed alpha
Helix 97	AK7	E	258	262	Right-handed 310
Helix 98	AK8	E	273	285	Right-handed alpha
Helix 99	AK9	E	286	288	Right-handed 310
Helix 100	AL1	E	289	294	Right-handed alpha
Helix 101	AL2	E	301	306	Right-handed 310
Helix 102	AL3	E	308	321	Right-handed alpha
Helix 103	AL4	E	334	336	Right-handed 310
Helix 104	AL5	E	337	349	Right-handed alpha
Helix 105	AL6	E	358	366	Right-handed alpha
Helix 106	AL7	E	368	374	Right-handed alpha
Helix 107	AL8	F	55	61	Right-handed alpha
Helix 108	AL9	F	78	92	Right-handed alpha
Helix 109	AM1	F	97	101	Right-handed 310
Helix 110	AM2	F	112	126	Right-handed alpha
Helix 111	AM3	F	137	145	Right-handed alpha
Helix 112	AM4	F	172	175	Right-handed 310
Helix 113	AM5	F	181	193	Right-handed alpha
Helix 114	AM6	F	194	196	Right-handed 310
Helix 115	AM7	F	202	217	Right-handed alpha
Helix 116	AM8	F	222	232	Right-handed alpha
Helix 117	AM9	F	252	263	Right-handed alpha
Helix 118	AN1	F	264	268	Right-handed 310
Helix 119	AN2	F	273	283	Right-handed alpha
Helix 120	AN3	F	289	295	Right-handed alpha
Helix 121	AN4	F	301	306	Right-handed 310
Helix 122	AN5	F	308	321	Right-handed alpha
Helix 123	AN6	F	334	336	Right-handed 310
Helix 124	AN7	F	337	348	Right-handed alpha
Helix 125	AN8	F	350	356	Right-handed 310
Helix 126	AN9	F	359	366	Right-handed alpha
Helix 127	AO1	F	369	374	Right-handed alpha
Helix 128	AO2	G	54	60	Right-handed alpha
Helix 129	AO3	G	61	65	Right-handed 310
Helix 130	AO4	G	78	92	Right-handed alpha
Helix 131	AO5	G	97	101	Right-handed 310
Helix 132	AO6	G	112	126	Right-handed alpha
Helix 133	AO7	G	136	146	Right-handed alpha
Helix 134	AO8	G	172	175	Right-handed 310
Helix 135	AO9	G	181	193	Right-handed alpha
Helix 136	AP1	G	194	197	Right-handed 310
Helix 137	AP2	G	202	216	Right-handed alpha
Helix 138	AP3	G	222	233	Right-handed alpha
Helix 139	AP4	G	252	257	Right-handed alpha
Helix 140	AP5	G	258	268	Right-handed 310
Helix 141	AP6	G	273	285	Right-handed alpha
Helix 142	AP7	G	286	288	Right-handed 310
Helix 143	AP8	G	289	294	Right-handed alpha
Helix 144	AP9	G	301	305	Right-handed 310
Helix 145	AQ1	G	308	321	Right-handed alpha
Helix 146	AQ2	G	337	349	Right-handed alpha
Helix 147	AQ3	G	350	355	Right-handed 310
Helix 148	AQ4	G	359	366	Right-handed alpha
Helix 149	AQ5	G	367	372	Right-handed 310

There are 44 sheets in PDB entry 8D15. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	66	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	299	parallel
Strand 5	A	329	330	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	169	170	anti-parallel
Strand 4	C	41	42	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	103	107	parallel
Strand 3	B	131	136	parallel
Strand 4	B	357	358	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	29	32	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	103	107	parallel
Strand 3	C	134	136	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	17	18	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	357	358	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	149	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	169	170	anti-parallel
Strand 4	E	41	42	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	151	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	169	170	anti-parallel
Strand 4	F	41	42	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	9	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	132	136	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	155	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	169	170	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	155	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	176	178	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	298	first strand
Strand 2	E	329	330	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	12	first strand
Strand 2	F	16	21	anti-parallel
Strand 3	F	29	32	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	75	76	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	107	first strand
Strand 2	F	131	136	parallel
Strand 3	F	357	358	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	177	178	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	150	155	anti-parallel
Strand 4	F	297	300	parallel
Strand 5	F	329	330	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	241	first strand
Strand 2	F	247	250	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	16	21	anti-parallel
Strand 3	G	8	12	anti-parallel
Strand 4	G	103	106	parallel
Strand 5	G	131	135	parallel
Strand 6	G	357	358	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	170	first strand
Strand 2	G	160	166	anti-parallel
Strand 3	G	176	177	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	170	first strand
Strand 2	G	160	166	anti-parallel
Strand 3	G	149	155	anti-parallel
Strand 4	G	297	299	parallel
Strand 5	G	329	330	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	238	241	first strand
Strand 2	G	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D15

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D15