Analysis of interatomic Contacts of Structural Units in PDB entry:
8D16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D16 entry

There are 14 chains in PDB entry 8D16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	GLU 72
A	GLY 74	PHE 375
B	THR 5	GLU 72
B	GLY 74	PHE 375
C	THR 5	GLU 72
C	GLY 74	PHE 375
D	THR 5	GLU 72
D	GLY 74	PHE 375
E	THR 5	GLU 72
E	GLY 74	PHE 375
F	THR 5	GLU 72
F	GLY 74	PHE 375
G	THR 5	GLU 72
G	GLY 74	PHE 375

There are152 helices in PDB entry 8D16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	93	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	128	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	193	Right-handed alpha
Helix 8	AA8	A	194	197	Right-handed 310
Helix 9	AA9	A	204	217	Right-handed alpha
Helix 10	AB1	A	222	232	Right-handed alpha
Helix 11	AB2	A	252	257	Right-handed alpha
Helix 12	AB3	A	258	268	Right-handed 310
Helix 13	AB4	A	273	283	Right-handed alpha
Helix 14	AB5	A	284	285	Right-handed 310
Helix 15	AB6	A	286	288	Right-handed 310
Helix 16	AB7	A	289	295	Right-handed alpha
Helix 17	AB8	A	301	306	Right-handed 310
Helix 18	AB9	A	308	321	Right-handed alpha
Helix 19	AC1	A	337	349	Right-handed alpha
Helix 20	AC2	A	350	356	Right-handed 310
Helix 21	AC3	A	359	364	Right-handed alpha
Helix 22	AC4	A	368	373	Right-handed alpha
Helix 23	AC5	B	55	60	Right-handed alpha
Helix 24	AC6	B	61	63	Right-handed 310
Helix 25	AC7	B	78	92	Right-handed alpha
Helix 26	AC8	B	97	101	Right-handed 310
Helix 27	AC9	B	112	126	Right-handed alpha
Helix 28	AD1	B	137	145	Right-handed alpha
Helix 29	AD2	B	181	193	Right-handed alpha
Helix 30	AD3	B	194	197	Right-handed 310
Helix 31	AD4	B	202	217	Right-handed alpha
Helix 32	AD5	B	222	233	Right-handed alpha
Helix 33	AD6	B	251	255	Right-handed 310
Helix 34	AD7	B	257	262	Right-handed 310
Helix 35	AD8	B	263	268	Right-handed 310
Helix 36	AD9	B	273	283	Right-handed alpha
Helix 37	AE1	B	289	295	Right-handed alpha
Helix 38	AE2	B	301	306	Right-handed 310
Helix 39	AE3	B	308	321	Right-handed alpha
Helix 40	AE4	B	334	336	Right-handed 310
Helix 41	AE5	B	337	349	Right-handed alpha
Helix 42	AE6	B	352	356	Right-handed 310
Helix 43	AE7	B	359	366	Right-handed alpha
Helix 44	AE8	B	368	373	Right-handed alpha
Helix 45	AE9	C	55	61	Right-handed alpha
Helix 46	AF1	C	78	92	Right-handed alpha
Helix 47	AF2	C	97	101	Right-handed 310
Helix 48	AF3	C	112	126	Right-handed alpha
Helix 49	AF4	C	137	145	Right-handed alpha
Helix 50	AF5	C	172	175	Right-handed 310
Helix 51	AF6	C	181	194	Right-handed alpha
Helix 52	AF7	C	195	197	Right-handed 310
Helix 53	AF8	C	202	217	Right-handed alpha
Helix 54	AF9	C	222	233	Right-handed alpha
Helix 55	AG1	C	252	257	Right-handed alpha
Helix 56	AG2	C	258	263	Right-handed alpha
Helix 57	AG3	C	264	268	Right-handed 310
Helix 58	AG4	C	273	283	Right-handed alpha
Helix 59	AG5	C	289	295	Right-handed alpha
Helix 60	AG6	C	301	306	Right-handed 310
Helix 61	AG7	C	308	321	Right-handed alpha
Helix 62	AG8	C	337	349	Right-handed alpha
Helix 63	AG9	C	350	355	Right-handed 310
Helix 64	AH1	C	359	364	Right-handed alpha
Helix 65	AH2	C	366	368	Right-handed 310
Helix 66	AH3	C	369	374	Right-handed alpha
Helix 67	AH4	D	56	59	Right-handed 310
Helix 68	AH5	D	61	63	Right-handed 310
Helix 69	AH6	D	79	92	Right-handed alpha
Helix 70	AH7	D	97	101	Right-handed 310
Helix 71	AH8	D	112	126	Right-handed alpha
Helix 72	AH9	D	137	144	Right-handed alpha
Helix 73	AI1	D	172	175	Right-handed 310
Helix 74	AI2	D	181	194	Right-handed alpha
Helix 75	AI3	D	195	197	Right-handed 310
Helix 76	AI4	D	202	217	Right-handed alpha
Helix 77	AI5	D	222	233	Right-handed alpha
Helix 78	AI6	D	234	237	Right-handed 310
Helix 79	AI7	D	252	257	Right-handed alpha
Helix 80	AI8	D	259	263	Right-handed 310
Helix 81	AI9	D	273	283	Right-handed alpha
Helix 82	AJ1	D	284	285	Right-handed 310
Helix 83	AJ2	D	286	288	Right-handed 310
Helix 84	AJ3	D	289	295	Right-handed alpha
Helix 85	AJ4	D	301	306	Right-handed 310
Helix 86	AJ5	D	308	321	Right-handed alpha
Helix 87	AJ6	D	334	336	Right-handed 310
Helix 88	AJ7	D	337	349	Right-handed alpha
Helix 89	AJ8	D	350	355	Right-handed 310
Helix 90	AJ9	D	359	366	Right-handed alpha
Helix 91	AK1	D	368	374	Right-handed alpha
Helix 92	AK2	E	55	60	Right-handed alpha
Helix 93	AK3	E	61	63	Right-handed 310
Helix 94	AK4	E	78	92	Right-handed alpha
Helix 95	AK5	E	97	101	Right-handed 310
Helix 96	AK6	E	112	126	Right-handed alpha
Helix 97	AK7	E	137	145	Right-handed alpha
Helix 98	AK8	E	172	175	Right-handed 310
Helix 99	AK9	E	181	193	Right-handed alpha
Helix 100	AL1	E	194	196	Right-handed 310
Helix 101	AL2	E	205	217	Right-handed alpha
Helix 102	AL3	E	222	233	Right-handed alpha
Helix 103	AL4	E	252	257	Right-handed alpha
Helix 104	AL5	E	258	262	Right-handed 310
Helix 105	AL6	E	273	283	Right-handed alpha
Helix 106	AL7	E	289	294	Right-handed alpha
Helix 107	AL8	E	301	306	Right-handed 310
Helix 108	AL9	E	308	321	Right-handed alpha
Helix 109	AM1	E	334	336	Right-handed 310
Helix 110	AM2	E	337	349	Right-handed alpha
Helix 111	AM3	E	350	356	Right-handed 310
Helix 112	AM4	E	359	366	Right-handed alpha
Helix 113	AM5	E	367	372	Right-handed 310
Helix 114	AM6	F	55	61	Right-handed alpha
Helix 115	AM7	F	78	92	Right-handed alpha
Helix 116	AM8	F	112	127	Right-handed alpha
Helix 117	AM9	F	137	145	Right-handed alpha
Helix 118	AN1	F	172	175	Right-handed 310
Helix 119	AN2	F	181	193	Right-handed alpha
Helix 120	AN3	F	194	197	Right-handed 310
Helix 121	AN4	F	202	217	Right-handed alpha
Helix 122	AN5	F	222	233	Right-handed alpha
Helix 123	AN6	F	252	260	Right-handed alpha
Helix 124	AN7	F	261	263	Right-handed 310
Helix 125	AN8	F	273	284	Right-handed alpha
Helix 126	AN9	F	289	295	Right-handed alpha
Helix 127	AO1	F	301	306	Right-handed 310
Helix 128	AO2	F	308	321	Right-handed alpha
Helix 129	AO3	F	334	336	Right-handed 310
Helix 130	AO4	F	337	348	Right-handed alpha
Helix 131	AO5	F	359	366	Right-handed alpha
Helix 132	AO6	F	368	373	Right-handed alpha
Helix 133	AO7	G	55	60	Right-handed alpha
Helix 134	AO8	G	61	63	Right-handed 310
Helix 135	AO9	G	78	92	Right-handed alpha
Helix 136	AP1	G	97	101	Right-handed 310
Helix 137	AP2	G	112	127	Right-handed alpha
Helix 138	AP3	G	137	145	Right-handed alpha
Helix 139	AP4	G	172	175	Right-handed 310
Helix 140	AP5	G	181	193	Right-handed alpha
Helix 141	AP6	G	194	197	Right-handed 310
Helix 142	AP7	G	204	216	Right-handed alpha
Helix 143	AP8	G	222	233	Right-handed alpha
Helix 144	AP9	G	252	257	Right-handed alpha
Helix 145	AQ1	G	258	263	Right-handed 310
Helix 146	AQ2	G	273	284	Right-handed alpha
Helix 147	AQ3	G	289	294	Right-handed alpha
Helix 148	AQ4	G	302	306	Right-handed 310
Helix 149	AQ5	G	308	321	Right-handed alpha
Helix 150	AQ6	G	337	349	Right-handed alpha
Helix 151	AQ7	G	359	366	Right-handed alpha
Helix 152	AQ8	G	369	374	Right-handed alpha

There are 41 sheets in PDB entry 8D16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	169	170	anti-parallel
Strand 4	C	41	42	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	8	12	anti-parallel
Strand 3	B	103	107	parallel
Strand 4	B	131	136	parallel
Strand 5	B	357	358	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	160	161	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	160	161	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	164	166	anti-parallel
Strand 5	B	169	170	anti-parallel
Strand 6	D	41	42	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	155	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	169	170	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	155	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	177	178	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	329	330	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	12	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	29	32	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	107	first strand
Strand 2	E	131	136	parallel
Strand 3	E	357	358	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	155	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	169	170	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	155	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	176	178	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	298	first strand
Strand 2	E	329	330	parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	16	21	anti-parallel
Strand 3	F	8	12	anti-parallel
Strand 4	F	103	107	parallel
Strand 5	F	131	136	parallel
Strand 6	F	357	358	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	177	178	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	150	155	anti-parallel
Strand 4	F	297	300	parallel
Strand 5	F	329	330	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	241	first strand
Strand 2	F	247	250	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	16	21	anti-parallel
Strand 3	G	8	12	anti-parallel
Strand 4	G	103	107	parallel
Strand 5	G	131	136	parallel
Strand 6	G	357	358	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	38	first strand
Strand 2	G	65	68	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	72	first strand
Strand 2	G	75	76	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	155	first strand
Strand 2	G	160	163	anti-parallel
Strand 3	G	176	178	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	166	first strand
Strand 2	G	169	170	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	238	241	first strand
Strand 2	G	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D16

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D16