Analysis of interatomic Contacts of Structural Units in PDB entry:
8D1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D1B entry

There are 4 chains in PDB entry 8D1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ILE 837CYS 1014
C
 ILE 837CYS 1014
B
 GLY 55ARG 320
A
 GLY 55ARG 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8D1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
852 857Right-handed alpha
Helix 2
AA2
D
992 996Right-handed 310
Helix 3
AA3
C
852 857Right-handed alpha
Helix 4
AA4
C
992 996Right-handed 310
Helix 5
AA5
B
56 64Right-handed alpha
Helix 6
AA6
B
92 96Right-handed 310
Helix 7
AA7
B
97 105Right-handed alpha
Helix 8
AA8
B
116 121Right-handed 310
Helix 9
AA9
B
136 140Right-handed 310
Helix 10
AB1
A
56 64Right-handed alpha
Helix 11
AB2
A
92 96Right-handed 310
Helix 12
AB3
A
97 105Right-handed alpha
Helix 13
AB4
A
116 121Right-handed 310
Helix 14
AB5
A
136 140Right-handed 310
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There are 6 sheets in PDB entry 8D1B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
894 897first strand
Strand 2
D
900 903anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
894 897first strand
Strand 2
C
900 903anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 249first strand
Strand 2
B
268 273anti-parallel
Strand 3
B
146 149anti-parallel
Strand 4
B
164 168anti-parallel
Strand 5
B
172 177anti-parallel
Strand 6
A
199 204parallel
Strand 7
A
216 221anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 221first strand
Strand 2
B
199 204anti-parallel
Strand 3
A
172 177parallel
Strand 4
A
164 168anti-parallel
Strand 5
A
146 149anti-parallel
Strand 6
A
268 273anti-parallel
Strand 7
A
246 249anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
240 241anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
240 241anti-parallel
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