Analysis of interatomic Contacts of Structural Units in PDB entry:
8D1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D1E entry

There are 5 chains in PDB entry 8D1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 THR 2GLN 377
E
 THR 2GLN 377
C
 THR 2GLN 377
A
 THR 2GLN 377
B
 THR 2GLN 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 8D1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
6 10Right-handed 310
Helix 2
AA2
D
15 23Right-handed 310
Helix 3
AA3
D
27 53Right-handed alpha
Helix 4
AA4
D
55 71Right-handed alpha
Helix 5
AA5
D
74 99Right-handed alpha
Helix 6
AA6
D
103 114Right-handed alpha
Helix 7
AA7
D
118 144Right-handed alpha
Helix 8
AA8
D
144 151Right-handed alpha
Helix 9
AA9
D
153 160Right-handed alpha
Helix 10
AB1
D
164 174Right-handed alpha
Helix 11
AB2
D
182 198Right-handed alpha
Helix 12
AB3
D
203 230Right-handed alpha
Helix 13
AB4
D
233 255Right-handed alpha
Helix 14
AB5
D
259 263Right-handed 310
Helix 15
AB6
D
274 295Right-handed alpha
Helix 16
AB7
D
306 324Right-handed alpha
Helix 17
AB8
D
351 355Right-handed 310
Helix 18
AB9
D
371 375Right-handed 310
Helix 19
AC1
E
6 10Right-handed 310
Helix 20
AC2
E
15 23Right-handed 310
Helix 21
AC3
E
27 53Right-handed alpha
Helix 22
AC4
E
55 71Right-handed alpha
Helix 23
AC5
E
74 99Right-handed alpha
Helix 24
AC6
E
103 114Right-handed alpha
Helix 25
AC7
E
118 144Right-handed alpha
Helix 26
AC8
E
144 151Right-handed alpha
Helix 27
AC9
E
153 160Right-handed alpha
Helix 28
AD1
E
164 174Right-handed alpha
Helix 29
AD2
E
182 198Right-handed alpha
Helix 30
AD3
E
203 230Right-handed alpha
Helix 31
AD4
E
233 255Right-handed alpha
Helix 32
AD5
E
259 263Right-handed 310
Helix 33
AD6
E
274 295Right-handed alpha
Helix 34
AD7
E
306 324Right-handed alpha
Helix 35
AD8
E
351 355Right-handed 310
Helix 36
AD9
E
371 375Right-handed 310
Helix 37
AE1
C
6 10Right-handed 310
Helix 38
AE2
C
15 23Right-handed 310
Helix 39
AE3
C
27 53Right-handed alpha
Helix 40
AE4
C
55 71Right-handed alpha
Helix 41
AE5
C
74 99Right-handed alpha
Helix 42
AE6
C
103 114Right-handed alpha
Helix 43
AE7
C
118 144Right-handed alpha
Helix 44
AE8
C
144 151Right-handed alpha
Helix 45
AE9
C
153 160Right-handed alpha
Helix 46
AF1
C
164 174Right-handed alpha
Helix 47
AF2
C
182 198Right-handed alpha
Helix 48
AF3
C
203 230Right-handed alpha
Helix 49
AF4
C
233 255Right-handed alpha
Helix 50
AF5
C
259 263Right-handed 310
Helix 51
AF6
C
274 295Right-handed alpha
Helix 52
AF7
C
306 324Right-handed alpha
Helix 53
AF8
C
351 355Right-handed 310
Helix 54
AF9
C
371 375Right-handed 310
Helix 55
AG1
A
6 10Right-handed 310
Helix 56
AG2
A
15 23Right-handed 310
Helix 57
AG3
A
27 53Right-handed alpha
Helix 58
AG4
A
55 71Right-handed alpha
Helix 59
AG5
A
74 99Right-handed alpha
Helix 60
AG6
A
103 114Right-handed alpha
Helix 61
AG7
A
118 144Right-handed alpha
Helix 62
AG8
A
144 151Right-handed alpha
Helix 63
AG9
A
153 160Right-handed alpha
Helix 64
AH1
A
164 174Right-handed alpha
Helix 65
AH2
A
182 198Right-handed alpha
Helix 66
AH3
A
203 230Right-handed alpha
Helix 67
AH4
A
233 255Right-handed alpha
Helix 68
AH5
A
259 263Right-handed 310
Helix 69
AH6
A
274 295Right-handed alpha
Helix 70
AH7
A
306 324Right-handed alpha
Helix 71
AH8
A
351 355Right-handed 310
Helix 72
AH9
A
371 375Right-handed 310
Helix 73
AI1
B
6 10Right-handed 310
Helix 74
AI2
B
15 23Right-handed 310
Helix 75
AI3
B
27 53Right-handed alpha
Helix 76
AI4
B
55 71Right-handed alpha
Helix 77
AI5
B
74 99Right-handed alpha
Helix 78
AI6
B
103 114Right-handed alpha
Helix 79
AI7
B
118 144Right-handed alpha
Helix 80
AI8
B
144 151Right-handed alpha
Helix 81
AI9
B
153 160Right-handed alpha
Helix 82
AJ1
B
164 174Right-handed alpha
Helix 83
AJ2
B
182 198Right-handed alpha
Helix 84
AJ3
B
203 230Right-handed alpha
Helix 85
AJ4
B
233 255Right-handed alpha
Helix 86
AJ5
B
259 263Right-handed 310
Helix 87
AJ6
B
274 295Right-handed alpha
Helix 88
AJ7
B
306 324Right-handed alpha
Helix 89
AJ8
B
351 355Right-handed 310
Helix 90
AJ9
B
371 375Right-handed 310
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There are no sheets in PDB entry 8D1E
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