Analysis of interatomic Contacts of Structural Units in PDB entry:
8D1S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D1S entry

There is 1 chain in PDB entry 8D1S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 28GLY 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8D1S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 82Right-handed alpha
Helix 2
AA2
A
86 88Right-handed 310
Helix 3
AA3
A
93 97Right-handed 310
Helix 4
AA4
A
104 114Right-handed alpha
Helix 5
AA5
A
139 160Right-handed alpha
Helix 6
AA6
A
175 189Right-handed alpha
Helix 7
AA7
A
199 207Right-handed alpha
Helix 8
AA8
A
251 272Right-handed alpha
Helix 9
AA9
A
274 277Right-handed 310
Helix 10
AB1
A
278 296Right-handed alpha
Helix 11
AB2
A
321 335Right-handed alpha
Helix 12
AB3
A
335 346Right-handed alpha
Helix 13
AB4
A
349 353Right-handed 310
Helix 14
AB5
A
360 364Right-handed 310
Helix 15
AB6
A
365 376Right-handed alpha
Helix 16
AB7
A
389 404Right-handed alpha
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There are 6 sheets in PDB entry 8D1S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
62 63anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
165 170parallel
Strand 5
A
192 198parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
90 91anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
124 131anti-parallel
Strand 3
A
134 138anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 247first strand
Strand 2
A
227 235anti-parallel
Strand 3
A
214 222anti-parallel
Strand 4
A
355 359parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 310first strand
Strand 2
A
313 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il