Analysis of interatomic Contacts of Structural Units in PDB entry:
8D1V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D1V entry

There are 3 chains in PDB entry 8D1V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1601
J	U 1	U 34
N	A 6	G 23

There are 39 helices in PDB entry 8D1V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	36	Right-handed alpha
Helix 2	AA2	A	37	39	Right-handed 310
Helix 3	AA3	A	57	76	Right-handed alpha
Helix 4	AA4	A	123	130	Right-handed alpha
Helix 5	AA5	A	163	167	Right-handed alpha
Helix 6	AA6	A	211	225	Right-handed alpha
Helix 7	AA7	A	260	276	Right-handed alpha
Helix 8	AA8	A	281	291	Right-handed alpha
Helix 9	AA9	A	292	295	Right-handed 310
Helix 10	AB1	A	328	337	Right-handed alpha
Helix 11	AB2	A	344	366	Right-handed alpha
Helix 12	AB3	A	443	460	Right-handed alpha
Helix 13	AB4	A	474	481	Right-handed alpha
Helix 14	AB5	A	542	554	Right-handed alpha
Helix 15	AB6	A	562	566	Right-handed 310
Helix 16	AB7	A	584	594	Right-handed alpha
Helix 17	AB8	A	595	598	Right-handed 310
Helix 18	AB9	A	599	610	Right-handed alpha
Helix 19	AC1	A	642	649	Right-handed alpha
Helix 20	AC2	A	675	691	Right-handed alpha
Helix 21	AC3	A	710	715	Right-handed alpha
Helix 22	AC4	A	780	784	Right-handed alpha
Helix 23	AC5	A	785	801	Right-handed alpha
Helix 24	AC6	A	809	813	Right-handed 310
Helix 25	AC7	A	829	833	Right-handed 310
Helix 26	AC8	A	920	924	Right-handed 310
Helix 27	AC9	A	946	962	Right-handed alpha
Helix 28	AD1	A	1300	1304	Right-handed 310
Helix 29	AD2	A	1331	1336	Right-handed alpha
Helix 30	AD3	A	1342	1348	Right-handed alpha
Helix 31	AD4	A	1395	1400	Right-handed alpha
Helix 32	AD5	A	1420	1426	Right-handed alpha
Helix 33	AD6	A	1464	1476	Right-handed alpha
Helix 34	AD7	A	1488	1492	Right-handed 310
Helix 35	AD8	A	1518	1535	Right-handed alpha
Helix 36	AD9	A	1538	1549	Right-handed alpha
Helix 37	AE1	A	1565	1569	Right-handed 310
Helix 38	AE2	A	1575	1582	Right-handed alpha
Helix 39	AE3	A	1588	1594	Right-handed alpha

There are 17 sheets in PDB entry 8D1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	199	207	anti-parallel
Strand 3	A	2	11	anti-parallel
Strand 4	A	231	237	anti-parallel
Strand 5	A	227	228	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	183	192	anti-parallel
Strand 3	A	168	176	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	52	56	anti-parallel
Strand 3	A	153	154	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	394	395	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	569	581	anti-parallel
Strand 5	A	557	558	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	569	581	anti-parallel
Strand 5	A	611	612	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	488	489	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	504	first strand
Strand 2	A	511	521	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	664	first strand
Strand 2	A	667	674	anti-parallel
Strand 3	A	728	730	anti-parallel
Strand 4	A	770	779	anti-parallel
Strand 5	A	723	725	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	664	first strand
Strand 2	A	667	674	anti-parallel
Strand 3	A	728	730	anti-parallel
Strand 4	A	770	779	anti-parallel
Strand 5	A	625	634	anti-parallel
Strand 6	A	817	821	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	744	first strand
Strand 2	A	751	759	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	836	837	first strand
Strand 2	A	1511	1514	parallel
Strand 3	A	1495	1506	anti-parallel
Strand 4	A	891	901	anti-parallel
Strand 5	A	1453	1463	anti-parallel
Strand 6	A	1357	1359	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	945	first strand
Strand 2	A	1362	1364	anti-parallel
Strand 3	A	1453	1463	anti-parallel
Strand 4	A	891	901	anti-parallel
Strand 5	A	1495	1506	anti-parallel
Strand 6	A	1483	1484	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	861	862	first strand
Strand 2	A	1558	1559	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	865	868	first strand
Strand 2	A	1412	1415	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	909	first strand
Strand 2	A	935	936	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	932	933	first strand
Strand 2	A	1442	1446	parallel
Strand 3	A	1385	1390	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D1V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D1V