Analysis of interatomic Contacts of Structural Units in PDB entry:
8D21

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D21 entry

There are 12 chains in PDB entry 8D21 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 1	ILE 173
A	ASP 11	ILE 326
H	GLU 1	SER 113
L	GLU 1	LYS 107
C	GLY 1	ILE 173
D	ASP 11	ILE 326
E	GLU 1	SER 113
F	GLU 1	LYS 107
G	GLY 1	ILE 173
I	ASP 11	ILE 326
J	GLU 1	SER 113
K	GLU 1	LYS 107

There are 30 helices in PDB entry 8D21. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	7	Right-handed alpha
Helix 2	AA2	B	37	58	Right-handed alpha
Helix 3	AA3	B	74	126	Right-handed alpha
Helix 4	AA4	B	145	154	Right-handed alpha
Helix 5	AA5	B	158	173	Right-handed alpha
Helix 6	AA6	A	65	71	Right-handed alpha
Helix 7	AA7	A	104	113	Right-handed alpha
Helix 8	AA8	A	187	196	Right-handed alpha
Helix 9	AA9	H	52	55	Right-handed 310
Helix 10	AB1	C	2	7	Right-handed alpha
Helix 11	AB2	C	37	58	Right-handed alpha
Helix 12	AB3	C	74	126	Right-handed alpha
Helix 13	AB4	C	145	154	Right-handed alpha
Helix 14	AB5	C	158	173	Right-handed alpha
Helix 15	AB6	D	65	71	Right-handed alpha
Helix 16	AB7	D	76	80	Right-handed 310
Helix 17	AB8	D	104	112	Right-handed alpha
Helix 18	AB9	D	187	196	Right-handed alpha
Helix 19	AC1	E	52	55	Right-handed 310
Helix 20	AC2	G	2	7	Right-handed alpha
Helix 21	AC3	G	37	58	Right-handed alpha
Helix 22	AC4	G	71	73	Right-handed 310
Helix 23	AC5	G	74	126	Right-handed alpha
Helix 24	AC6	G	145	154	Right-handed alpha
Helix 25	AC7	G	158	173	Right-handed alpha
Helix 26	AC8	I	65	71	Right-handed alpha
Helix 27	AC9	I	104	112	Right-handed alpha
Helix 28	AD1	I	187	196	Right-handed alpha
Helix 29	AD2	J	52	55	Right-handed 310
Helix 30	AD3	J	61	64	Right-handed 310

There are 51 sheets in PDB entry 8D21. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	22	27	anti-parallel
Strand 3	A	12	17	anti-parallel
Strand 4	B	137	139	anti-parallel
Strand 5	B	131	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	34	35	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	315	317	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	294	295	parallel
Strand 3	A	307	308	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	274	278	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	87	89	parallel
Strand 3	A	267	269	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	258	260	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	251	254	anti-parallel
Strand 5	A	151	153	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	258	260	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	229	237	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	141	first strand
Strand 2	A	144	146	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	210	213	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	281	282	anti-parallel
Strand 3	A	302	303	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	77	78	anti-parallel
Strand 4	H	71	72	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	88	93	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	19	first strand
Strand 2	H	81	82	anti-parallel
Strand 3	H	67	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	23	25	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	102	104	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	37	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	62	67	first strand
Strand 2	L	70	75	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	D	12	17	anti-parallel
Strand 3	C	137	139	anti-parallel
Strand 4	C	131	132	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	34	35	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	41	first strand
Strand 2	D	315	317	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	44	first strand
Strand 2	D	294	295	parallel
Strand 3	D	307	308	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	53	first strand
Strand 2	D	274	278	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	87	89	parallel
Strand 3	D	267	269	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	258	260	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	251	254	anti-parallel
Strand 5	D	151	153	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	258	260	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	229	236	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	141	first strand
Strand 2	D	144	146	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	169	first strand
Strand 2	D	242	247	anti-parallel
Strand 3	D	202	206	anti-parallel
Strand 4	D	209	211	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	288	first strand
Strand 2	D	281	283	anti-parallel
Strand 3	D	302	303	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	21	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	17	19	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	21	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	23	25	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	102	104	parallel
Strand 3	F	85	89	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	67	first strand
Strand 2	F	70	75	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	24	first strand
Strand 2	I	15	17	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	132	first strand
Strand 2	G	138	139	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	26	first strand
Strand 2	I	34	35	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	41	first strand
Strand 2	I	315	317	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	44	first strand
Strand 2	I	294	295	parallel
Strand 3	I	307	308	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	53	first strand
Strand 2	I	274	278	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	87	89	parallel
Strand 3	I	267	269	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	141	first strand
Strand 2	I	144	146	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	153	first strand
Strand 2	I	251	254	anti-parallel
Strand 3	I	176	184	anti-parallel
Strand 4	I	229	236	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	153	first strand
Strand 2	I	251	254	anti-parallel
Strand 3	I	176	184	anti-parallel
Strand 4	I	258	259	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	164	169	first strand
Strand 2	I	242	247	anti-parallel
Strand 3	I	202	205	anti-parallel
Strand 4	I	210	213	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	281	282	first strand
Strand 2	I	302	303	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	94	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	57	59	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	23	25	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	45	49	anti-parallel
Strand 3	K	33	38	anti-parallel
Strand 4	K	85	90	anti-parallel
Strand 5	K	102	103	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	62	67	first strand
Strand 2	K	70	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D21

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D21