Analysis of interatomic Contacts of Structural Units in PDB entry:
8D27


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D27 entry

There are 2 chains in PDB entry 8D27 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 501PRO 781
B
 LYS 501PRO 781
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8D27. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
517 519Right-handed 310
Helix 2
AA2
A
520 529Right-handed alpha
Helix 3
AA3
A
529 534Right-handed alpha
Helix 4
AA4
A
555 576Right-handed alpha
Helix 5
AA5
A
588 599Right-handed alpha
Helix 6
AA6
A
624 627Right-handed 310
Helix 7
AA7
A
628 634Right-handed alpha
Helix 8
AA8
A
638 643Right-handed alpha
Helix 9
AA9
A
652 654Right-handed 310
Helix 10
AB1
A
665 676Right-handed alpha
Helix 11
AB2
A
682 688Right-handed alpha
Helix 12
AB3
A
689 701Right-handed alpha
Helix 13
AB4
A
713 715Right-handed 310
Helix 14
AB5
A
732 747Right-handed alpha
Helix 15
AB6
A
765 780Right-handed alpha
Helix 16
AB7
B
517 519Right-handed 310
Helix 17
AB8
B
520 529Right-handed alpha
Helix 18
AB9
B
529 534Right-handed alpha
Helix 19
AC1
B
555 576Right-handed alpha
Helix 20
AC2
B
588 599Right-handed alpha
Helix 21
AC3
B
624 627Right-handed 310
Helix 22
AC4
B
628 634Right-handed alpha
Helix 23
AC5
B
638 643Right-handed alpha
Helix 24
AC6
B
652 654Right-handed 310
Helix 25
AC7
B
665 674Right-handed alpha
Helix 26
AC8
B
682 688Right-handed alpha
Helix 27
AC9
B
689 701Right-handed alpha
Helix 28
AD1
B
713 715Right-handed 310
Helix 29
AD2
B
732 747Right-handed alpha
Helix 30
AD3
B
758 762Right-handed 310
Helix 31
AD4
B
765 780Right-handed alpha
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There are 2 sheets in PDB entry 8D27. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 539first strand
Strand 2
A
502 507parallel
Strand 3
A
579 583parallel
Strand 4
A
749 755parallel
Strand 5
A
706 711parallel
Strand 6
A
604 608parallel
Strand 7
A
656 661parallel
Strand 8
A
678 681parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
537 539first strand
Strand 2
B
502 507parallel
Strand 3
B
579 583parallel
Strand 4
B
748 755parallel
Strand 5
B
705 711parallel
Strand 6
B
604 608parallel
Strand 7
B
656 661parallel
Strand 8
B
678 681parallel
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