Analysis of interatomic Contacts of Structural Units in PDB entry:
8D29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D29 entry

There are 8 chains in PDB entry 8D29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	LYS 226
B	ASP 2	GLU 214
C	G 1	C 34
D	GLU 4	SER 227
E	ASP 2	GLU 214
F	G 1	C 34
G	GLU 4	LYS 226
H	GLU 4	GLY 45

There are 39 helices in PDB entry 8D29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	35	Right-handed 310
Helix 2	AA2	A	77	79	Right-handed 310
Helix 3	AA3	A	90	94	Right-handed 310
Helix 4	AA4	A	104	109	Right-handed alpha
Helix 5	AA5	A	168	170	Right-handed 310
Helix 6	AA6	A	199	201	Right-handed 310
Helix 7	AA7	A	213	216	Right-handed 310
Helix 8	AA8	B	80	84	Right-handed 310
Helix 9	AA9	B	122	128	Right-handed alpha
Helix 10	AB1	B	184	188	Right-handed alpha
Helix 11	AB2	D	31	35	Right-handed 310
Helix 12	AB3	D	90	94	Right-handed 310
Helix 13	AB4	D	104	109	Right-handed alpha
Helix 14	AB5	D	168	170	Right-handed 310
Helix 15	AB6	D	199	201	Right-handed 310
Helix 16	AB7	D	213	216	Right-handed 310
Helix 17	AB8	E	80	84	Right-handed 310
Helix 18	AB9	E	122	129	Right-handed alpha
Helix 19	AC1	E	184	190	Right-handed alpha
Helix 20	AC2	G	31	35	Right-handed 310
Helix 21	AC3	G	77	79	Right-handed 310
Helix 22	AC4	G	90	94	Right-handed 310
Helix 23	AC5	G	104	109	Right-handed alpha
Helix 24	AC6	G	168	170	Right-handed 310
Helix 25	AC7	G	199	202	Right-handed 310
Helix 26	AC8	G	213	216	Right-handed 310
Helix 27	AC9	H	31	35	Right-handed 310
Helix 28	AD1	H	77	79	Right-handed 310
Helix 29	AD2	H	90	94	Right-handed 310
Helix 30	AD3	H	104	109	Right-handed alpha
Helix 31	AD4	H	168	170	Right-handed 310
Helix 32	AD5	H	199	201	Right-handed 310
Helix 33	AD6	H	213	216	Right-handed 310
Helix 34	AD7	I	80	84	Right-handed 310
Helix 35	AD8	I	122	129	Right-handed alpha
Helix 36	AD9	I	184	189	Right-handed alpha
Helix 37	AE1	L	80	84	Right-handed 310
Helix 38	AE2	L	122	128	Right-handed alpha
Helix 39	AE3	L	184	189	Right-handed alpha

There are 44 sheets in PDB entry 8D29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	21	28	anti-parallel
Strand 3	A	81	86	anti-parallel
Strand 4	A	71	76	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	119	123	parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	37	42	anti-parallel
Strand 5	A	48	54	anti-parallel
Strand 6	A	61	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	119	123	parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	112	115	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	147	157	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	147	157	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	181	182	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	207	212	anti-parallel
Strand 3	A	217	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	20	26	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	63	68	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	103	107	parallel
Strand 3	B	85	91	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	50	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	103	107	parallel
Strand 3	B	85	91	anti-parallel
Strand 4	B	98	99	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	130	140	anti-parallel
Strand 3	B	174	183	anti-parallel
Strand 4	B	160	164	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	146	151	anti-parallel
Strand 3	B	192	198	anti-parallel
Strand 4	B	206	211	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	119	123	parallel
Strand 3	D	95	102	anti-parallel
Strand 4	D	37	42	anti-parallel
Strand 5	D	48	54	anti-parallel
Strand 6	D	61	63	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	119	123	parallel
Strand 3	D	95	102	anti-parallel
Strand 4	D	112	115	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	136	first strand
Strand 2	D	147	157	anti-parallel
Strand 3	D	188	197	anti-parallel
Strand 4	D	175	177	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	136	first strand
Strand 2	D	147	157	anti-parallel
Strand 3	D	188	197	anti-parallel
Strand 4	D	181	182	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	166	first strand
Strand 2	D	207	212	anti-parallel
Strand 3	D	217	222	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	20	26	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	63	68	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	103	107	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	50	anti-parallel
Strand 6	E	54	55	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	103	107	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	98	99	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	119	first strand
Strand 2	E	130	140	anti-parallel
Strand 3	E	174	183	anti-parallel
Strand 4	E	160	164	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	155	first strand
Strand 2	E	146	151	anti-parallel
Strand 3	E	192	198	anti-parallel
Strand 4	E	206	211	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	10	first strand
Strand 2	G	21	28	anti-parallel
Strand 3	G	81	86	anti-parallel
Strand 4	G	71	76	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	15	first strand
Strand 2	G	119	123	parallel
Strand 3	G	95	102	anti-parallel
Strand 4	G	36	42	anti-parallel
Strand 5	G	48	54	anti-parallel
Strand 6	G	61	63	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	15	first strand
Strand 2	G	119	123	parallel
Strand 3	G	95	102	anti-parallel
Strand 4	G	112	115	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	136	first strand
Strand 2	G	147	157	anti-parallel
Strand 3	G	188	197	anti-parallel
Strand 4	G	175	177	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	136	first strand
Strand 2	G	147	157	anti-parallel
Strand 3	G	188	197	anti-parallel
Strand 4	G	181	182	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	166	first strand
Strand 2	G	207	212	anti-parallel
Strand 3	G	217	222	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	119	123	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	54	anti-parallel
Strand 6	H	61	63	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	119	123	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	112	115	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	136	first strand
Strand 2	H	147	157	anti-parallel
Strand 3	H	188	197	anti-parallel
Strand 4	H	175	177	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	136	first strand
Strand 2	H	147	157	anti-parallel
Strand 3	H	188	197	anti-parallel
Strand 4	H	181	182	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	163	166	first strand
Strand 2	H	207	212	anti-parallel
Strand 3	H	217	222	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	8	first strand
Strand 2	I	20	26	anti-parallel
Strand 3	I	71	76	anti-parallel
Strand 4	I	63	68	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	14	first strand
Strand 2	I	103	107	parallel
Strand 3	I	86	91	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	50	anti-parallel
Strand 6	I	54	55	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	14	first strand
Strand 2	I	103	107	parallel
Strand 3	I	86	91	anti-parallel
Strand 4	I	98	99	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	115	119	first strand
Strand 2	I	130	140	anti-parallel
Strand 3	I	174	183	anti-parallel
Strand 4	I	160	164	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	155	first strand
Strand 2	I	146	151	anti-parallel
Strand 3	I	192	198	anti-parallel
Strand 4	I	206	211	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D29

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D29