Analysis of interatomic Contacts of Structural Units in PDB entry:
8D2J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D2J entry

There are 4 chains in PDB entry 8D2J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 27	TYR 509
A	GLU 26	TYR 509
C	GLU 26	ALA 507
D	GLU 26	TYR 509

There are 73 helices in PDB entry 8D2J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	28	43	Right-handed alpha
Helix 2	AA2	B	50	60	Right-handed alpha
Helix 3	AA3	B	61	77	Right-handed alpha
Helix 4	AA4	B	82	93	Right-handed alpha
Helix 5	AA5	B	99	106	Right-handed alpha
Helix 6	AA6	B	109	113	Right-handed 310
Helix 7	AA7	B	115	143	Right-handed alpha
Helix 8	AA8	B	144	169	Right-handed alpha
Helix 9	AA9	B	171	174	Right-handed 310
Helix 10	AB1	B	175	202	Right-handed alpha
Helix 11	AB2	B	205	223	Right-handed alpha
Helix 12	AB3	B	223	236	Right-handed alpha
Helix 13	AB4	B	287	311	Right-handed alpha
Helix 14	AB5	B	312	320	Right-handed 310
Helix 15	AB6	B	321	328	Right-handed 310
Helix 16	AB7	B	332	337	Right-handed alpha
Helix 17	AB8	B	345	350	Right-handed alpha
Helix 18	AB9	A	28	42	Right-handed alpha
Helix 19	AC1	A	50	61	Right-handed alpha
Helix 20	AC2	A	61	77	Right-handed alpha
Helix 21	AC3	A	82	93	Right-handed alpha
Helix 22	AC4	A	99	106	Right-handed alpha
Helix 23	AC5	A	109	114	Right-handed alpha
Helix 24	AC6	A	115	126	Right-handed alpha
Helix 25	AC7	A	126	143	Right-handed alpha
Helix 26	AC8	A	144	169	Right-handed alpha
Helix 27	AC9	A	171	174	Right-handed 310
Helix 28	AD1	A	175	196	Right-handed alpha
Helix 29	AD2	A	196	202	Right-handed alpha
Helix 30	AD3	A	205	223	Right-handed alpha
Helix 31	AD4	A	223	236	Right-handed alpha
Helix 32	AD5	A	287	311	Right-handed alpha
Helix 33	AD6	A	312	320	Right-handed 310
Helix 34	AD7	A	321	328	Right-handed 310
Helix 35	AD8	A	332	337	Right-handed alpha
Helix 36	AD9	A	345	350	Right-handed alpha
Helix 37	AE1	C	28	42	Right-handed alpha
Helix 38	AE2	C	43	45	Right-handed 310
Helix 39	AE3	C	50	61	Right-handed alpha
Helix 40	AE4	C	61	77	Right-handed alpha
Helix 41	AE5	C	82	93	Right-handed alpha
Helix 42	AE6	C	99	106	Right-handed alpha
Helix 43	AE7	C	109	114	Right-handed alpha
Helix 44	AE8	C	115	126	Right-handed alpha
Helix 45	AE9	C	126	143	Right-handed alpha
Helix 46	AF1	C	144	169	Right-handed alpha
Helix 47	AF2	C	171	174	Right-handed 310
Helix 48	AF3	C	175	196	Right-handed alpha
Helix 49	AF4	C	196	201	Right-handed alpha
Helix 50	AF5	C	205	223	Right-handed alpha
Helix 51	AF6	C	223	236	Right-handed alpha
Helix 52	AF7	C	287	311	Right-handed alpha
Helix 53	AF8	C	312	320	Right-handed 310
Helix 54	AF9	C	321	328	Right-handed 310
Helix 55	AG1	C	332	337	Right-handed alpha
Helix 56	AG2	C	345	350	Right-handed alpha
Helix 57	AG3	D	28	45	Right-handed alpha
Helix 58	AG4	D	50	60	Right-handed alpha
Helix 59	AG5	D	61	77	Right-handed alpha
Helix 60	AG6	D	82	93	Right-handed alpha
Helix 61	AG7	D	99	106	Right-handed alpha
Helix 62	AG8	D	107	113	Right-handed 310
Helix 63	AG9	D	115	143	Right-handed alpha
Helix 64	AH1	D	144	169	Right-handed alpha
Helix 65	AH2	D	171	174	Right-handed 310
Helix 66	AH3	D	175	202	Right-handed alpha
Helix 67	AH4	D	205	223	Right-handed alpha
Helix 68	AH5	D	223	236	Right-handed alpha
Helix 69	AH6	D	287	311	Right-handed alpha
Helix 70	AH7	D	312	320	Right-handed 310
Helix 71	AH8	D	324	328	Right-handed 310
Helix 72	AH9	D	332	337	Right-handed alpha
Helix 73	AI1	D	345	350	Right-handed alpha

There are 22 sheets in PDB entry 8D2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	247	first strand
Strand 2	B	260	267	anti-parallel
Strand 3	B	273	279	anti-parallel
Strand 4	B	352	353	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	256	257	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	344	first strand
Strand 2	B	488	499	anti-parallel
Strand 3	B	471	482	anti-parallel
Strand 4	B	365	366	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	385	392	anti-parallel
Strand 3	B	406	407	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	385	392	anti-parallel
Strand 3	B	374	381	anti-parallel
Strand 4	B	413	418	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	443	first strand
Strand 2	B	424	432	anti-parallel
Strand 3	B	461	466	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	247	first strand
Strand 2	A	260	267	anti-parallel
Strand 3	A	273	279	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	256	257	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	344	first strand
Strand 2	A	488	499	anti-parallel
Strand 3	A	471	482	anti-parallel
Strand 4	A	365	366	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	385	392	anti-parallel
Strand 3	A	406	407	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	385	392	anti-parallel
Strand 3	A	374	381	anti-parallel
Strand 4	A	413	418	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	443	first strand
Strand 2	A	424	432	anti-parallel
Strand 3	A	461	466	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	247	first strand
Strand 2	C	260	267	anti-parallel
Strand 3	C	273	279	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	344	first strand
Strand 2	C	488	499	anti-parallel
Strand 3	C	471	482	anti-parallel
Strand 4	C	365	366	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	402	first strand
Strand 2	C	385	392	anti-parallel
Strand 3	C	406	407	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	402	first strand
Strand 2	C	385	392	anti-parallel
Strand 3	C	374	381	anti-parallel
Strand 4	C	413	418	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	443	first strand
Strand 2	C	424	432	anti-parallel
Strand 3	C	461	466	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	247	first strand
Strand 2	D	260	267	anti-parallel
Strand 3	D	273	279	anti-parallel
Strand 4	D	352	353	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	344	first strand
Strand 2	D	488	499	anti-parallel
Strand 3	D	471	482	anti-parallel
Strand 4	D	365	366	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	402	first strand
Strand 2	D	385	392	anti-parallel
Strand 3	D	406	407	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	402	first strand
Strand 2	D	385	392	anti-parallel
Strand 3	D	374	381	anti-parallel
Strand 4	D	413	418	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	443	first strand
Strand 2	D	424	432	anti-parallel
Strand 3	D	461	466	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D2J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D2J