Analysis of interatomic Contacts of Structural Units in PDB entry:
8D2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D2P entry

There are 3 chains in PDB entry 8D2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7SER 1134
B
 G 2 C 106
T
 C 14 T 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 8D2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 92Right-handed alpha
Helix 2
AA2
A
104 116Right-handed alpha
Helix 3
AA3
A
120 138Right-handed alpha
Helix 4
AA4
A
147 154Right-handed alpha
Helix 5
AA5
A
158 173Right-handed alpha
Helix 6
AA6
A
180 192Right-handed alpha
Helix 7
AA7
A
221 237Right-handed alpha
Helix 8
AA8
A
239 251Right-handed alpha
Helix 9
AA9
A
259 263Right-handed 310
Helix 10
AB1
A
279 293Right-handed alpha
Helix 11
AB2
A
306 319Right-handed alpha
Helix 12
AB3
A
326 333Right-handed alpha
Helix 13
AB4
A
339 341Right-handed 310
Helix 14
AB5
A
354 359Right-handed alpha
Helix 15
AB6
A
364 377Right-handed alpha
Helix 16
AB7
A
381 391Right-handed alpha
Helix 17
AB8
A
392 405Right-handed alpha
Helix 18
AB9
A
406 408Right-handed 310
Helix 19
AC1
A
421 430Right-handed alpha
Helix 20
AC2
A
441 456Right-handed alpha
Helix 21
AC3
A
458 468Right-handed alpha
Helix 22
AC4
A
486 508Right-handed alpha
Helix 23
AC5
A
524 552Right-handed alpha
Helix 24
AC6
A
558 571Right-handed alpha
Helix 25
AC7
A
594 598Right-handed 310
Helix 26
AC8
A
611 618Right-handed alpha
Helix 27
AC9
A
621 629Right-handed alpha
Helix 28
AD1
A
633 643Right-handed alpha
Helix 29
AD2
A
653 669Right-handed alpha
Helix 30
AD3
A
681 703Right-handed alpha
Helix 31
AD4
A
711 721Right-handed alpha
Helix 32
AD5
A
725 730Right-handed alpha
Helix 33
AD6
A
742 747Right-handed 310
Helix 34
AD7
A
748 758Right-handed alpha
Helix 35
AD8
A
761 777Right-handed alpha
Helix 36
AD9
A
797 807Right-handed alpha
Helix 37
AE1
A
809 820Right-handed alpha
Helix 38
AE2
A
856 860Right-handed alpha
Helix 39
AE3
A
864 876Right-handed alpha
Helix 40
AE4
A
957 963Right-handed alpha
Helix 41
AE5
A
981 986Right-handed alpha
Helix 42
AE6
A
988 997Right-handed alpha
Helix 43
AE7
A
1025 1030Right-handed alpha
Helix 44
AE8
A
1058 1068Right-handed alpha
Helix 45
AE9
A
1076 1086Right-handed alpha
Helix 46
AF1
A
1093 1098Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8D2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
706 710first strand
Strand 2
A
512 516parallel
Strand 3
A
13 19parallel
Strand 4
A
23 31anti-parallel
Strand 5
A
36 46anti-parallel
Strand 6
A
824 826parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
295 298anti-parallel
Strand 3
A
343 344anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 591first strand
Strand 2
A
606 609anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 849first strand
Strand 2
A
911 914anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 855first strand
Strand 2
A
889 891anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 924first strand
Strand 2
A
927 930anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
948 956first strand
Strand 2
A
934 943anti-parallel
Strand 3
A
1001 1006anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1091first strand
Strand 2
A
1050 1053anti-parallel
Strand 3
A
1037 1042anti-parallel
Strand 4
A
1011 1013anti-parallel
Strand 5
A
1104 1106anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il