Analysis of interatomic Contacts of Structural Units in PDB entry:
8D2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D2Q entry

There are 5 chains in PDB entry 8D2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7SER 1134
B
 C 11 U 105
T
 C 14 G 24
X
 A 1 A 13
D
 A 29 T 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8D2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 92Right-handed alpha
Helix 2
AA2
A
104 116Right-handed alpha
Helix 3
AA3
A
120 138Right-handed alpha
Helix 4
AA4
A
147 153Right-handed alpha
Helix 5
AA5
A
158 173Right-handed alpha
Helix 6
AA6
A
180 192Right-handed alpha
Helix 7
AA7
A
221 237Right-handed alpha
Helix 8
AA8
A
239 251Right-handed alpha
Helix 9
AA9
A
486 508Right-handed alpha
Helix 10
AB1
A
524 552Right-handed alpha
Helix 11
AB2
A
558 572Right-handed alpha
Helix 12
AB3
A
636 643Right-handed alpha
Helix 13
AB4
A
653 669Right-handed alpha
Helix 14
AB5
A
685 703Right-handed alpha
Helix 15
AB6
A
714 721Right-handed alpha
Helix 16
AB7
A
725 730Right-handed alpha
Helix 17
AB8
A
748 758Right-handed alpha
Helix 18
AB9
A
761 782Right-handed alpha
Helix 19
AC1
A
797 807Right-handed alpha
Helix 20
AC2
A
809 820Right-handed alpha
Helix 21
AC3
A
856 861Right-handed alpha
Helix 22
AC4
A
864 876Right-handed alpha
Helix 23
AC5
A
957 963Right-handed alpha
Helix 24
AC6
A
981 986Right-handed alpha
Helix 25
AC7
A
988 997Right-handed alpha
Helix 26
AC8
A
1024 1033Right-handed alpha
Helix 27
AC9
A
1058 1071Right-handed alpha
Helix 28
AD1
A
1076 1086Right-handed alpha
Helix 29
AD2
A
1094 1098Right-handed alpha
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There are 8 sheets in PDB entry 8D2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
706 711first strand
Strand 2
A
512 517parallel
Strand 3
A
13 19parallel
Strand 4
A
23 31anti-parallel
Strand 5
A
36 46anti-parallel
Strand 6
A
824 826parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 591first strand
Strand 2
A
606 607anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 849first strand
Strand 2
A
911 914anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 855first strand
Strand 2
A
889 891anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
899 900first strand
Strand 2
A
905 906anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 924first strand
Strand 2
A
927 930anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
948 956first strand
Strand 2
A
934 943anti-parallel
Strand 3
A
1001 1006anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1093first strand
Strand 2
A
1048 1053anti-parallel
Strand 3
A
1037 1045anti-parallel
Strand 4
A
1011 1013anti-parallel
Strand 5
A
1104 1106anti-parallel
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