Analysis of interatomic Contacts of Structural Units in PDB entry:
8D2S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D2S entry

There are 3 chains in PDB entry 8D2S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33ARG 507
B
 ALA 1ASN 201
C
 ALA 1ALA 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8D2S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 47Right-handed alpha
Helix 2
AA2
A
47 68Right-handed alpha
Helix 3
AA3
A
72 100Right-handed alpha
Helix 4
AA4
A
109 128Right-handed alpha
Helix 5
AA5
A
136 162Right-handed alpha
Helix 6
AA6
A
162 167Right-handed alpha
Helix 7
AA7
A
169 200Right-handed alpha
Helix 8
AA8
A
209 213Right-handed 310
Helix 9
AA9
A
232 262Right-handed alpha
Helix 10
AB1
A
274 288Right-handed alpha
Helix 11
AB2
A
288 311Right-handed alpha
Helix 12
AB3
A
312 319Right-handed alpha
Helix 13
AB4
A
325 351Right-handed alpha
Helix 14
AB5
A
353 361Right-handed alpha
Helix 15
AB6
A
363 372Right-handed alpha
Helix 16
AB7
A
377 414Right-handed alpha
Helix 17
AB8
A
420 451Right-handed alpha
Helix 18
AB9
A
460 473Right-handed alpha
Helix 19
AC1
A
473 488Right-handed alpha
Helix 20
AC2
A
493 507Right-handed alpha
Helix 21
AC3
B
117 123Right-handed alpha
Helix 22
AC4
C
28 31Right-handed 310
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There are 11 sheets in PDB entry 8D2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
68 73anti-parallel
Strand 4
B
60 64anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
99 102parallel
Strand 3
B
83 88anti-parallel
Strand 4
B
32 37anti-parallel
Strand 5
B
44 48anti-parallel
Strand 6
B
52 53anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
126 135anti-parallel
Strand 3
B
166 174anti-parallel
Strand 4
B
152 155anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
141 144anti-parallel
Strand 3
B
184 188anti-parallel
Strand 4
B
196 200anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
66 71anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
44 51anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
93 95anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 91first strand
Strand 2
C
109 111anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 123first strand
Strand 2
C
139 144anti-parallel
Strand 3
C
169 175anti-parallel
Strand 4
C
159 160anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 123first strand
Strand 2
C
139 144anti-parallel
Strand 3
C
169 175anti-parallel
Strand 4
C
164 166anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 136first strand
Strand 2
C
177 178anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 151first strand
Strand 2
C
184 189anti-parallel
Strand 3
C
197 200anti-parallel
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