Analysis of interatomic Contacts of Structural Units in PDB entry:
8D2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D2T entry

There are 3 chains in PDB entry 8D2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33ARG 507
B
 ALA 1ASN 201
C
 ALA 1ALA 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8D2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 47Right-handed alpha
Helix 2
AA2
A
47 68Right-handed alpha
Helix 3
AA3
A
74 100Right-handed alpha
Helix 4
AA4
A
109 128Right-handed alpha
Helix 5
AA5
A
136 162Right-handed alpha
Helix 6
AA6
A
162 167Right-handed alpha
Helix 7
AA7
A
169 197Right-handed alpha
Helix 8
AA8
A
232 261Right-handed alpha
Helix 9
AA9
A
277 288Right-handed alpha
Helix 10
AB1
A
288 311Right-handed alpha
Helix 11
AB2
A
311 319Right-handed alpha
Helix 12
AB3
A
325 351Right-handed alpha
Helix 13
AB4
A
353 363Right-handed alpha
Helix 14
AB5
A
364 372Right-handed alpha
Helix 15
AB6
A
378 414Right-handed alpha
Helix 16
AB7
A
421 451Right-handed alpha
Helix 17
AB8
A
460 473Right-handed alpha
Helix 18
AB9
A
473 488Right-handed alpha
Helix 19
AC1
A
492 495Right-handed 310
Helix 20
AC2
A
496 507Right-handed alpha
Helix 21
AC3
B
117 123Right-handed alpha
Helix 22
AC4
C
28 31Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 8D2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
68 73anti-parallel
Strand 4
B
60 63anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
99 102parallel
Strand 3
B
83 88anti-parallel
Strand 4
B
32 37anti-parallel
Strand 5
B
44 48anti-parallel
Strand 6
B
52 53anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
126 135anti-parallel
Strand 3
B
166 174anti-parallel
Strand 4
B
152 155anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
140 144anti-parallel
Strand 3
B
184 189anti-parallel
Strand 4
B
198 200anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
66 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
44 51anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
90 92anti-parallel
Strand 5
C
109 110anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 123first strand
Strand 2
C
135 144anti-parallel
Strand 3
C
169 178anti-parallel
Strand 4
C
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 123first strand
Strand 2
C
135 144anti-parallel
Strand 3
C
169 178anti-parallel
Strand 4
C
164 166anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 151first strand
Strand 2
C
185 189anti-parallel
Strand 3
C
197 199anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il