Analysis of interatomic Contacts of Structural Units in PDB entry:
8D2U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D2U entry

There are 3 chains in PDB entry 8D2U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33ARG 507
B
 ALA 1ASN 201
C
 ALA 1ALA 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8D2U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 46Right-handed alpha
Helix 2
AA2
A
47 68Right-handed alpha
Helix 3
AA3
A
72 100Right-handed alpha
Helix 4
AA4
A
109 128Right-handed alpha
Helix 5
AA5
A
136 162Right-handed alpha
Helix 6
AA6
A
162 167Right-handed alpha
Helix 7
AA7
A
169 200Right-handed alpha
Helix 8
AA8
A
232 262Right-handed alpha
Helix 9
AA9
A
279 288Right-handed alpha
Helix 10
AB1
A
288 319Right-handed alpha
Helix 11
AB2
A
325 340Right-handed alpha
Helix 12
AB3
A
340 351Right-handed alpha
Helix 13
AB4
A
353 361Right-handed alpha
Helix 14
AB5
A
363 373Right-handed alpha
Helix 15
AB6
A
377 414Right-handed alpha
Helix 16
AB7
A
419 451Right-handed alpha
Helix 17
AB8
A
460 473Right-handed alpha
Helix 18
AB9
A
473 488Right-handed alpha
Helix 19
AC1
A
493 507Right-handed alpha
Helix 20
AC2
B
117 123Right-handed alpha
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There are 10 sheets in PDB entry 8D2U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
99 102parallel
Strand 3
B
83 88anti-parallel
Strand 4
B
32 37anti-parallel
Strand 5
B
43 48anti-parallel
Strand 6
B
52 53anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
69 73anti-parallel
Strand 3
B
60 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
126 135anti-parallel
Strand 3
B
166 174anti-parallel
Strand 4
B
152 155anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
140 144anti-parallel
Strand 3
B
184 189anti-parallel
Strand 4
B
196 200anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
66 71anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 39first strand
Strand 2
C
44 51anti-parallel
Strand 3
C
56 58anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 91first strand
Strand 2
C
109 111anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 123first strand
Strand 2
C
135 144anti-parallel
Strand 3
C
169 178anti-parallel
Strand 4
C
158 160anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 123first strand
Strand 2
C
135 144anti-parallel
Strand 3
C
169 178anti-parallel
Strand 4
C
164 166anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 151first strand
Strand 2
C
184 189anti-parallel
Strand 3
C
196 200anti-parallel
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