Analysis of interatomic Contacts of Structural Units in PDB entry:
8D2Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D2Z entry

There are 2 chains in PDB entry 8D2Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 14ASP 319
B
 LYS 15GLN 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8D2Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 66Right-handed alpha
Helix 2
AA2
A
81 86Right-handed alpha
Helix 3
AA3
A
87 92Right-handed 310
Helix 4
AA4
A
103 124Right-handed alpha
Helix 5
AA5
A
125 128Right-handed 310
Helix 6
AA6
A
130 134Right-handed 310
Helix 7
AA7
A
184 187Right-handed 310
Helix 8
AA8
A
202 212Right-handed alpha
Helix 9
AA9
A
228 256Right-handed alpha
Helix 10
AB1
A
259 276Right-handed alpha
Helix 11
AB2
A
280 297Right-handed alpha
Helix 12
AB3
A
306 319Right-handed alpha
Helix 13
AB4
B
53 66Right-handed alpha
Helix 14
AB5
B
81 86Right-handed alpha
Helix 15
AB6
B
87 95Right-handed 310
Helix 16
AB7
B
103 124Right-handed alpha
Helix 17
AB8
B
125 128Right-handed 310
Helix 18
AB9
B
130 134Right-handed 310
Helix 19
AC1
B
184 187Right-handed 310
Helix 20
AC2
B
202 214Right-handed alpha
Helix 21
AC3
B
228 256Right-handed alpha
Helix 22
AC4
B
259 276Right-handed alpha
Helix 23
AC5
B
280 297Right-handed alpha
Helix 24
AC6
B
306 317Right-handed alpha
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There are 4 sheets in PDB entry 8D2Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
25 30anti-parallel
Strand 3
A
36 40anti-parallel
Strand 4
A
45 48anti-parallel
Strand 5
A
72 76parallel
Strand 6
A
98 102parallel
Strand 7
A
142 144parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 152first strand
Strand 2
A
155 160anti-parallel
Strand 3
A
172 175anti-parallel
Strand 4
A
180 182anti-parallel
Strand 5
A
217 219parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
25 30anti-parallel
Strand 3
B
36 40anti-parallel
Strand 4
B
45 48anti-parallel
Strand 5
B
72 76parallel
Strand 6
B
98 102parallel
Strand 7
B
142 144parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 152first strand
Strand 2
B
155 160anti-parallel
Strand 3
B
172 174anti-parallel
Strand 4
B
180 182anti-parallel
Strand 5
B
217 219parallel
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