Analysis of interatomic Contacts of Structural Units in PDB entry:
8D30

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D30 entry

There are 2 chains in PDB entry 8D30 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	LEU 588
B	PRO 2	LEU 588

There are 6 helices in PDB entry 8D30. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	69	Right-handed 310
Helix 2	AA2	A	129	131	Right-handed 310
Helix 3	AA3	A	491	502	Right-handed alpha
Helix 4	AA4	B	67	69	Right-handed 310
Helix 5	AA5	B	492	493	Right-handed 310
Helix 6	AA6	B	495	497	Right-handed 310

There are 29 sheets in PDB entry 8D30. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	14	first strand
Strand 2	A	293	301	anti-parallel
Strand 3	A	285	290	anti-parallel
Strand 4	A	274	278	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	23	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	38	43	anti-parallel
Strand 4	A	49	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	66	first strand
Strand 2	A	71	76	anti-parallel
Strand 3	A	80	85	anti-parallel
Strand 4	A	91	96	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	107	first strand
Strand 2	A	113	118	anti-parallel
Strand 3	A	123	127	anti-parallel
Strand 4	A	134	138	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	150	first strand
Strand 2	A	157	162	anti-parallel
Strand 3	A	167	171	anti-parallel
Strand 4	A	179	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	193	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	211	215	anti-parallel
Strand 4	A	220	225	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	237	first strand
Strand 2	A	243	248	anti-parallel
Strand 3	A	253	257	anti-parallel
Strand 4	A	263	267	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	314	318	anti-parallel
Strand 3	A	321	327	anti-parallel
Strand 4	A	343	350	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	360	first strand
Strand 2	A	366	371	anti-parallel
Strand 3	A	374	379	anti-parallel
Strand 4	A	384	390	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	396	first strand
Strand 2	A	402	407	anti-parallel
Strand 3	A	411	416	anti-parallel
Strand 4	A	419	424	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	434	first strand
Strand 2	A	439	442	anti-parallel
Strand 3	A	447	450	anti-parallel
Strand 4	A	457	461	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	470	first strand
Strand 2	A	476	480	anti-parallel
Strand 3	A	485	490	anti-parallel
Strand 4	A	514	520	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	506	first strand
Strand 2	A	509	510	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	530	first strand
Strand 2	A	533	538	anti-parallel
Strand 3	A	542	547	anti-parallel
Strand 4	A	550	556	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	567	first strand
Strand 2	A	572	576	anti-parallel
Strand 3	A	582	586	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	14	first strand
Strand 2	B	293	301	anti-parallel
Strand 3	B	285	290	anti-parallel
Strand 4	B	274	278	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	29	34	anti-parallel
Strand 3	B	38	43	anti-parallel
Strand 4	B	48	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	66	first strand
Strand 2	B	71	76	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	107	first strand
Strand 2	B	113	118	anti-parallel
Strand 3	B	123	127	anti-parallel
Strand 4	B	133	138	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	150	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	167	171	anti-parallel
Strand 4	B	179	181	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	193	first strand
Strand 2	B	201	206	anti-parallel
Strand 3	B	211	215	anti-parallel
Strand 4	B	220	225	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	237	first strand
Strand 2	B	243	248	anti-parallel
Strand 3	B	253	257	anti-parallel
Strand 4	B	263	267	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	308	first strand
Strand 2	B	314	318	anti-parallel
Strand 3	B	321	326	anti-parallel
Strand 4	B	344	346	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	360	first strand
Strand 2	B	366	371	anti-parallel
Strand 3	B	374	379	anti-parallel
Strand 4	B	384	390	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	395	first strand
Strand 2	B	404	406	anti-parallel
Strand 3	B	412	413	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	434	first strand
Strand 2	B	439	442	anti-parallel
Strand 3	B	448	450	anti-parallel
Strand 4	B	457	460	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	470	first strand
Strand 2	B	476	480	anti-parallel
Strand 3	B	485	489	anti-parallel
Strand 4	B	515	520	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	530	first strand
Strand 2	B	533	538	anti-parallel
Strand 3	B	542	547	anti-parallel
Strand 4	B	550	556	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	567	first strand
Strand 2	B	572	576	anti-parallel
Strand 3	B	582	586	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D30

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D30