Analysis of interatomic Contacts of Structural Units in PDB entry:
8D3R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D3R entry

There are 5 chains in PDB entry 8D3R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 69SER 1235
B
 GLU 64VAL 485
C
 GLU 67VAL 485
P
 A 3 T 24
T
 G 4 T 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 8D3R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 76Right-handed 310
Helix 2
AA2
A
80 88Right-handed alpha
Helix 3
AA3
A
100 110Right-handed alpha
Helix 4
AA4
A
134 160Right-handed alpha
Helix 5
AA5
A
225 230Right-handed alpha
Helix 6
AA6
A
240 244Right-handed 310
Helix 7
AA7
A
271 276Right-handed alpha
Helix 8
AA8
A
277 278Right-handed 310
Helix 9
AA9
A
279 283Right-handed 310
Helix 10
AB1
A
294 303Right-handed alpha
Helix 11
AB2
A
305 316Right-handed alpha
Helix 12
AB3
A
345 350Right-handed 310
Helix 13
AB4
A
355 364Right-handed alpha
Helix 14
AB5
A
381 388Right-handed alpha
Helix 15
AB6
A
388 418Right-handed alpha
Helix 16
AB7
A
420 431Right-handed alpha
Helix 17
AB8
A
439 471Right-handed alpha
Helix 18
AB9
A
472 482Right-handed 310
Helix 19
AC1
A
484 488Right-handed 310
Helix 20
AC2
A
538 554Right-handed alpha
Helix 21
AC3
A
555 559Right-handed 310
Helix 22
AC4
A
570 577Right-handed alpha
Helix 23
AC5
A
598 603Right-handed alpha
Helix 24
AC6
A
648 661Right-handed alpha
Helix 25
AC7
A
769 776Right-handed alpha
Helix 26
AC8
A
787 810Right-handed alpha
Helix 27
AC9
A
817 821Right-handed 310
Helix 28
AD1
A
822 826Right-handed 310
Helix 29
AD2
A
871 878Right-handed 310
Helix 30
AD3
A
893 908Right-handed alpha
Helix 31
AD4
A
914 921Right-handed alpha
Helix 32
AD5
A
930 940Right-handed alpha
Helix 33
AD6
A
945 955Right-handed alpha
Helix 34
AD7
A
957 970Right-handed alpha
Helix 35
AD8
A
976 981Right-handed alpha
Helix 36
AD9
A
981 987Right-handed alpha
Helix 37
AE1
A
1052 1056Right-handed 310
Helix 38
AE2
A
1057 1065Right-handed alpha
Helix 39
AE3
A
1080 1084Right-handed 310
Helix 40
AE4
A
1092 1124Right-handed alpha
Helix 41
AE5
A
1145 1168Right-handed alpha
Helix 42
AE6
A
1205 1210Right-handed alpha
Helix 43
AE7
A
1219 1228Right-handed alpha
Helix 44
AE8
B
65 76Right-handed alpha
Helix 45
AE9
B
87 94Right-handed alpha
Helix 46
AF1
B
100 119Right-handed alpha
Helix 47
AF2
B
150 157Right-handed alpha
Helix 48
AF3
B
165 177Right-handed alpha
Helix 49
AF4
B
184 191Right-handed alpha
Helix 50
AF5
B
192 193Right-handed 310
Helix 51
AF6
B
194 199Right-handed 310
Helix 52
AF7
B
247 266Right-handed alpha
Helix 53
AF8
B
269 271Right-handed 310
Helix 54
AF9
B
308 315Right-handed alpha
Helix 55
AG1
B
318 323Right-handed 310
Helix 56
AG2
B
342 353Right-handed alpha
Helix 57
AG3
B
362 367Right-handed alpha
Helix 58
AG4
B
391 409Right-handed alpha
Helix 59
AG5
B
424 435Right-handed alpha
Helix 60
AG6
B
444 450Right-handed alpha
Helix 61
AG7
B
470 484Right-handed alpha
Helix 62
AG8
C
68 76Right-handed alpha
Helix 63
AG9
C
87 94Right-handed alpha
Helix 64
AH1
C
100 119Right-handed alpha
Helix 65
AH2
C
149 159Right-handed alpha
Helix 66
AH3
C
165 178Right-handed alpha
Helix 67
AH4
C
184 192Right-handed alpha
Helix 68
AH5
C
192 198Right-handed alpha
Helix 69
AH6
C
199 201Right-handed 310
Helix 70
AH7
C
244 246Right-handed 310
Helix 71
AH8
C
247 266Right-handed alpha
Helix 72
AH9
C
269 271Right-handed 310
Helix 73
AI1
C
308 315Right-handed alpha
Helix 74
AI2
C
342 354Right-handed alpha
Helix 75
AI3
C
391 409Right-handed alpha
Helix 76
AI4
C
417 419Right-handed 310
Helix 77
AI5
C
424 435Right-handed alpha
Helix 78
AI6
C
444 450Right-handed alpha
Helix 79
AI7
C
470 485Right-handed alpha
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There are 14 sheets in PDB entry 8D3R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
196 201anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
290 293parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
837 840anti-parallel
Strand 3
A
814 816anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
747 751first strand
Strand 2
A
619 625anti-parallel
Strand 3
A
610 615anti-parallel
Strand 4
A
606 607anti-parallel
Strand 5
A
779 780anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1131first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
884 890anti-parallel
Strand 4
A
1183 1186anti-parallel
Strand 5
A
1216 1218anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
296 307anti-parallel
Strand 6
B
285 293anti-parallel
Strand 7
B
273 279anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
C
145 148anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 415first strand
Strand 2
B
383 387parallel
Strand 3
B
439 443parallel
Strand 4
B
452 457anti-parallel
Strand 5
B
463 467anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
206 218parallel
Strand 3
C
230 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
297 305anti-parallel
Strand 6
C
285 292anti-parallel
Strand 7
C
273 279anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 134first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 325first strand
Strand 2
C
330 331anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 415first strand
Strand 2
C
383 387parallel
Strand 3
C
439 443parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
463 467anti-parallel
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