Analysis of interatomic Contacts of Structural Units in PDB entry:
8D3U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D3U entry

There are 3 chains in PDB entry 8D3U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 33TYR 1013
B
 SER 19SER 303
G
 ASP 28VAL 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8D3U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 45Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
79 88Right-handed alpha
Helix 4
AA4
A
91 110Right-handed alpha
Helix 5
AA5
A
119 153Right-handed alpha
Helix 6
AA6
A
255 260Right-handed alpha
Helix 7
AA7
A
272 304Right-handed alpha
Helix 8
AA8
A
306 321Right-handed alpha
Helix 9
AA9
A
325 343Right-handed alpha
Helix 10
AB1
A
352 359Right-handed alpha
Helix 11
AB2
A
405 419Right-handed alpha
Helix 12
AB3
A
440 454Right-handed alpha
Helix 13
AB4
A
456 464Right-handed alpha
Helix 14
AB5
A
500 507Right-handed alpha
Helix 15
AB6
A
521 538Right-handed alpha
Helix 16
AB7
A
588 599Right-handed alpha
Helix 17
AB8
A
610 622Right-handed alpha
Helix 18
AB9
A
630 639Right-handed alpha
Helix 19
AC1
A
641 645Right-handed 310
Helix 20
AC2
A
658 662Right-handed 310
Helix 21
AC3
A
664 675Right-handed alpha
Helix 22
AC4
A
684 697Right-handed alpha
Helix 23
AC5
A
708 710Right-handed 310
Helix 24
AC6
A
711 718Right-handed alpha
Helix 25
AC7
A
729 736Right-handed alpha
Helix 26
AC8
A
746 770Right-handed alpha
Helix 27
AC9
A
773 787Right-handed alpha
Helix 28
AD1
A
793 805Right-handed alpha
Helix 29
AD2
A
806 812Right-handed alpha
Helix 30
AD3
A
813 815Right-handed 310
Helix 31
AD4
A
836 845Right-handed alpha
Helix 32
AD5
A
847 867Right-handed alpha
Helix 33
AD6
A
869 873Right-handed 310
Helix 34
AD7
A
876 881Right-handed alpha
Helix 35
AD8
A
897 927Right-handed alpha
Helix 36
AD9
A
933 938Right-handed alpha
Helix 37
AE1
A
941 961Right-handed alpha
Helix 38
AE2
A
963 968Right-handed alpha
Helix 39
AE3
A
974 980Right-handed 310
Helix 40
AE4
A
981 1002Right-handed alpha
Helix 41
AE5
A
1005 1011Right-handed alpha
Helix 42
AE6
B
34 61Right-handed alpha
Helix 43
AE7
B
69 73Right-handed 310
Helix 44
AE8
B
94 97Right-handed 310
Helix 45
AE9
B
98 110Right-handed alpha
Helix 46
AF1
B
111 113Right-handed 310
Helix 47
AF2
B
152 157Right-handed 310
Helix 48
AF3
B
217 222Right-handed alpha
Helix 49
AF4
G
36 58Right-handed alpha
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There are 9 sheets in PDB entry 8D3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
158 162anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
238 248anti-parallel
Strand 5
A
193 203anti-parallel
Strand 6
A
215 216anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
238 248anti-parallel
Strand 3
A
193 203anti-parallel
Strand 4
A
232 233anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
738 740anti-parallel
Strand 3
A
720 724parallel
Strand 4
A
702 706parallel
Strand 5
A
362 365parallel
Strand 6
A
602 605parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
573 582anti-parallel
Strand 4
A
540 549anti-parallel
Strand 5
A
494 499anti-parallel
Strand 6
A
478 483anti-parallel
Strand 7
A
466 470anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
573 582anti-parallel
Strand 4
A
508 511parallel
Strand 5
A
518 519anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
437 438anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 653first strand
Strand 2
A
677 678parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
177 180anti-parallel
Strand 3
B
258 262anti-parallel
Strand 4
B
228 230anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
296 301parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
208 215anti-parallel
Strand 5
B
237 239anti-parallel
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