Analysis of interatomic Contacts of Structural Units in PDB entry:
8D3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D3W entry

There are 3 chains in PDB entry 8D3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 32TYR 1013
B
 ILE 16SER 303
G
 MET 27SER 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8D3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 45Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
79 87Right-handed alpha
Helix 4
AA4
A
88 90Right-handed 310
Helix 5
AA5
A
91 108Right-handed alpha
Helix 6
AA6
A
120 150Right-handed alpha
Helix 7
AA7
A
150 155Right-handed alpha
Helix 8
AA8
A
173 175Right-handed 310
Helix 9
AA9
A
273 304Right-handed alpha
Helix 10
AB1
A
308 322Right-handed alpha
Helix 11
AB2
A
325 344Right-handed alpha
Helix 12
AB3
A
351 356Right-handed alpha
Helix 13
AB4
A
405 416Right-handed alpha
Helix 14
AB5
A
441 452Right-handed alpha
Helix 15
AB6
A
458 464Right-handed alpha
Helix 16
AB7
A
500 506Right-handed alpha
Helix 17
AB8
A
521 537Right-handed alpha
Helix 18
AB9
A
588 599Right-handed alpha
Helix 19
AC1
A
610 622Right-handed alpha
Helix 20
AC2
A
630 639Right-handed alpha
Helix 21
AC3
A
641 645Right-handed 310
Helix 22
AC4
A
646 650Right-handed 310
Helix 23
AC5
A
657 661Right-handed alpha
Helix 24
AC6
A
664 674Right-handed alpha
Helix 25
AC7
A
684 696Right-handed alpha
Helix 26
AC8
A
708 710Right-handed 310
Helix 27
AC9
A
711 718Right-handed alpha
Helix 28
AD1
A
729 735Right-handed alpha
Helix 29
AD2
A
745 772Right-handed alpha
Helix 30
AD3
A
777 786Right-handed alpha
Helix 31
AD4
A
793 802Right-handed alpha
Helix 32
AD5
A
807 815Right-handed 310
Helix 33
AD6
A
836 846Right-handed alpha
Helix 34
AD7
A
846 866Right-handed alpha
Helix 35
AD8
A
869 873Right-handed 310
Helix 36
AD9
A
876 881Right-handed alpha
Helix 37
AE1
A
897 927Right-handed alpha
Helix 38
AE2
A
933 937Right-handed 310
Helix 39
AE3
A
941 961Right-handed alpha
Helix 40
AE4
A
974 980Right-handed 310
Helix 41
AE5
A
981 1002Right-handed alpha
Helix 42
AE6
A
1005 1011Right-handed alpha
Helix 43
AE7
B
32 60Right-handed alpha
Helix 44
AE8
B
94 97Right-handed 310
Helix 45
AE9
B
98 110Right-handed alpha
Helix 46
AF1
B
111 117Right-handed 310
Helix 47
AF2
B
152 156Right-handed 310
Helix 48
AF3
B
217 222Right-handed alpha
Helix 49
AF4
B
231 235Right-handed 310
Helix 50
AF5
B
239 243Right-handed 310
Helix 51
AF6
G
36 58Right-handed alpha
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There are 10 sheets in PDB entry 8D3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
158 162anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
243 250anti-parallel
Strand 5
A
192 198anti-parallel
Strand 6
A
232 233anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
202 204anti-parallel
Strand 3
A
238 241anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
738 740anti-parallel
Strand 3
A
720 724parallel
Strand 4
A
702 705parallel
Strand 5
A
362 365parallel
Strand 6
A
602 606parallel
Strand 7
A
677 681parallel
Strand 8
A
652 656parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
380 383anti-parallel
Strand 3
A
577 580anti-parallel
Strand 4
A
542 545anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 470first strand
Strand 2
A
480 484anti-parallel
Strand 3
A
493 495anti-parallel
Strand 4
A
548 550anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 513first strand
Strand 2
A
516 519anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 889first strand
Strand 2
A
895 896anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
176 180anti-parallel
Strand 3
B
258 263anti-parallel
Strand 4
B
227 230anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
294 301parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
211 215anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
148 149parallel
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