Analysis of interatomic Contacts of Structural Units in PDB entry:
8D3X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D3X entry

There are 3 chains in PDB entry 8D3X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 19SER 303
G
 ASP 28SER 58
A
 LEU 25PHE 989
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8D3X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
33 60Right-handed alpha
Helix 2
AA2
B
98 110Right-handed alpha
Helix 3
AA3
B
152 156Right-handed 310
Helix 4
AA4
G
36 58Right-handed alpha
Helix 5
AA5
A
37 45Right-handed alpha
Helix 6
AA6
A
54 66Right-handed alpha
Helix 7
AA7
A
79 88Right-handed alpha
Helix 8
AA8
A
91 109Right-handed alpha
Helix 9
AA9
A
119 138Right-handed alpha
Helix 10
AB1
A
146 151Right-handed 310
Helix 11
AB2
A
255 268Right-handed alpha
Helix 12
AB3
A
272 304Right-handed alpha
Helix 13
AB4
A
306 322Right-handed alpha
Helix 14
AB5
A
326 343Right-handed alpha
Helix 15
AB6
A
352 360Right-handed alpha
Helix 16
AB7
A
405 418Right-handed alpha
Helix 17
AB8
A
431 435Right-handed 310
Helix 18
AB9
A
440 454Right-handed alpha
Helix 19
AC1
A
456 464Right-handed alpha
Helix 20
AC2
A
500 507Right-handed alpha
Helix 21
AC3
A
521 537Right-handed alpha
Helix 22
AC4
A
588 599Right-handed alpha
Helix 23
AC5
A
610 622Right-handed alpha
Helix 24
AC6
A
630 638Right-handed alpha
Helix 25
AC7
A
641 645Right-handed 310
Helix 26
AC8
A
646 650Right-handed 310
Helix 27
AC9
A
659 663Right-handed 310
Helix 28
AD1
A
664 675Right-handed alpha
Helix 29
AD2
A
684 698Right-handed alpha
Helix 30
AD3
A
711 718Right-handed alpha
Helix 31
AD4
A
729 735Right-handed alpha
Helix 32
AD5
A
744 772Right-handed alpha
Helix 33
AD6
A
773 786Right-handed alpha
Helix 34
AD7
A
794 804Right-handed alpha
Helix 35
AD8
A
806 812Right-handed alpha
Helix 36
AD9
A
818 824Right-handed 310
Helix 37
AE1
A
836 845Right-handed alpha
Helix 38
AE2
A
846 865Right-handed alpha
Helix 39
AE3
A
876 881Right-handed alpha
Helix 40
AE4
A
897 928Right-handed alpha
Helix 41
AE5
A
933 938Right-handed alpha
Helix 42
AE6
A
941 959Right-handed alpha
Helix 43
AE7
A
964 969Right-handed alpha
Helix 44
AE8
A
974 980Right-handed 310
Helix 45
AE9
A
981 1002Right-handed alpha
Helix 46
AF1
A
1005 1012Right-handed alpha
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There are 9 sheets in PDB entry 8D3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
178 180anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
294 301parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
211 213anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
260 263anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
241 250anti-parallel
Strand 5
A
192 202anti-parallel
Strand 6
A
232 233anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
738 740anti-parallel
Strand 3
A
720 724parallel
Strand 4
A
702 706parallel
Strand 5
A
362 365parallel
Strand 6
A
602 606parallel
Strand 7
A
677 680parallel
Strand 8
A
652 655parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
380 383anti-parallel
Strand 3
A
573 580anti-parallel
Strand 4
A
543 549anti-parallel
Strand 5
A
494 499anti-parallel
Strand 6
A
478 483anti-parallel
Strand 7
A
468 470anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
380 383anti-parallel
Strand 3
A
573 580anti-parallel
Strand 4
A
508 513parallel
Strand 5
A
516 519anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
437 438anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 889first strand
Strand 2
A
895 896anti-parallel
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