Analysis of interatomic Contacts of Structural Units in PDB entry:
8D3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8D3Y entry

There are 4 chains in PDB entry 8D3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 32SER 365
A
 LYS 367TYR 1013
B
 SER 19SER 303
G
 ASP 28SER 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8D3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 45Right-handed alpha
Helix 2
AA2
A
54 65Right-handed alpha
Helix 3
AA3
A
77 84Right-handed alpha
Helix 4
AA4
A
90 111Right-handed alpha
Helix 5
AA5
A
117 143Right-handed alpha
Helix 6
AA6
A
147 152Right-handed alpha
Helix 7
AA7
A
171 175Right-handed 310
Helix 8
AA8
A
251 254Right-handed 310
Helix 9
AA9
A
255 261Right-handed alpha
Helix 10
AB1
A
272 284Right-handed alpha
Helix 11
AB2
A
286 304Right-handed alpha
Helix 12
AB3
A
306 320Right-handed alpha
Helix 13
AB4
A
326 344Right-handed alpha
Helix 14
AB5
A
352 360Right-handed alpha
Helix 15
AB6
A
405 419Right-handed alpha
Helix 16
AB7
A
431 435Right-handed 310
Helix 17
AB8
A
440 454Right-handed alpha
Helix 18
AB9
A
456 464Right-handed alpha
Helix 19
AC1
A
500 505Right-handed alpha
Helix 20
AC2
A
523 537Right-handed alpha
Helix 21
AC3
A
588 599Right-handed alpha
Helix 22
AC4
A
610 622Right-handed alpha
Helix 23
AC5
A
630 639Right-handed alpha
Helix 24
AC6
A
646 650Right-handed 310
Helix 25
AC7
A
657 661Right-handed alpha
Helix 26
AC8
A
664 675Right-handed alpha
Helix 27
AC9
A
684 698Right-handed alpha
Helix 28
AD1
A
711 718Right-handed alpha
Helix 29
AD2
A
745 771Right-handed alpha
Helix 30
AD3
A
773 786Right-handed alpha
Helix 31
AD4
A
793 803Right-handed alpha
Helix 32
AD5
A
806 812Right-handed alpha
Helix 33
AD6
A
836 846Right-handed alpha
Helix 34
AD7
A
846 865Right-handed alpha
Helix 35
AD8
A
869 873Right-handed 310
Helix 36
AD9
A
876 881Right-handed alpha
Helix 37
AE1
A
897 927Right-handed alpha
Helix 38
AE2
A
933 938Right-handed alpha
Helix 39
AE3
A
941 959Right-handed alpha
Helix 40
AE4
A
974 980Right-handed 310
Helix 41
AE5
A
981 1002Right-handed alpha
Helix 42
AE6
A
1005 1012Right-handed alpha
Helix 43
AE7
B
33 59Right-handed alpha
Helix 44
AE8
B
94 97Right-handed 310
Helix 45
AE9
B
98 110Right-handed alpha
Helix 46
AF1
B
111 113Right-handed 310
Helix 47
AF2
B
239 243Right-handed 310
Helix 48
AF3
G
36 58Right-handed alpha
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There are 9 sheets in PDB entry 8D3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 170first strand
Strand 2
A
159 163anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
239 248anti-parallel
Strand 5
A
193 203anti-parallel
Strand 6
A
215 217anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 170first strand
Strand 2
A
159 163anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
239 248anti-parallel
Strand 5
A
193 203anti-parallel
Strand 6
A
232 233anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
738 740anti-parallel
Strand 3
A
720 724parallel
Strand 4
A
702 704parallel
Strand 5
A
362 364parallel
Strand 6
A
602 606parallel
Strand 7
A
679 681parallel
Strand 8
A
654 656parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 383first strand
Strand 2
A
386 389anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
437 438anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 469first strand
Strand 2
A
479 483anti-parallel
Strand 3
A
493 499anti-parallel
Strand 4
A
544 550anti-parallel
Strand 5
A
573 577anti-parallel
Strand 6
A
508 513parallel
Strand 7
A
516 517anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 889first strand
Strand 2
A
895 896anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
294 301parallel
Strand 3
B
270 278anti-parallel
Strand 4
B
211 213anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
258 263anti-parallel
Strand 3
B
227 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il