Analysis of interatomic Contacts of Structural Units in PDB entry:
8D3Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D3Z entry

There are 2 chains in PDB entry 8D3Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 26	SER 424
B	PRO 26	SER 424

There are 21 helices in PDB entry 8D3Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	150	155	Right-handed 310
Helix 2	AA2	A	174	190	Right-handed alpha
Helix 3	AA3	A	204	217	Right-handed alpha
Helix 4	AA4	A	226	232	Right-handed 310
Helix 5	AA5	A	236	249	Right-handed alpha
Helix 6	AA6	A	272	280	Right-handed alpha
Helix 7	AA7	A	305	309	Right-handed 310
Helix 8	AA8	A	310	315	Right-handed alpha
Helix 9	AA9	A	381	385	Right-handed 310
Helix 10	AB1	A	402	404	Right-handed 310
Helix 11	AB2	A	405	418	Right-handed alpha
Helix 12	AB3	B	150	154	Right-handed 310
Helix 13	AB4	B	174	190	Right-handed alpha
Helix 14	AB5	B	204	217	Right-handed alpha
Helix 15	AB6	B	226	231	Right-handed 310
Helix 16	AB7	B	236	249	Right-handed alpha
Helix 17	AB8	B	305	309	Right-handed 310
Helix 18	AB9	B	310	315	Right-handed alpha
Helix 19	AC1	B	334	337	Right-handed 310
Helix 20	AC2	B	381	386	Right-handed 310
Helix 21	AC3	B	400	418	Right-handed alpha

There are 12 sheets in PDB entry 8D3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	B	41	48	anti-parallel
Strand 3	B	53	61	anti-parallel
Strand 4	B	101	109	anti-parallel
Strand 5	B	84	91	anti-parallel
Strand 6	B	74	76	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	91	first strand
Strand 2	A	101	109	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	41	48	anti-parallel
Strand 5	B	32	34	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	72	78	anti-parallel
Strand 3	A	121	128	anti-parallel
Strand 4	A	136	144	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	224	first strand
Strand 2	A	193	199	parallel
Strand 3	A	162	169	parallel
Strand 4	A	255	258	parallel
Strand 5	A	329	332	anti-parallel
Strand 6	A	283	293	anti-parallel
Strand 7	A	361	365	parallel
Strand 8	A	263	266	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	224	first strand
Strand 2	A	193	199	parallel
Strand 3	A	162	169	parallel
Strand 4	A	255	258	parallel
Strand 5	A	329	332	anti-parallel
Strand 6	A	283	293	anti-parallel
Strand 7	A	351	353	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	378	380	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	319	first strand
Strand 2	A	394	398	anti-parallel
Strand 3	A	389	391	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	347	348	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	127	first strand
Strand 2	B	137	144	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	224	first strand
Strand 2	B	193	199	parallel
Strand 3	B	160	169	parallel
Strand 4	B	253	258	parallel
Strand 5	B	329	332	anti-parallel
Strand 6	B	285	293	anti-parallel
Strand 7	B	361	365	parallel
Strand 8	B	263	266	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	224	first strand
Strand 2	B	193	199	parallel
Strand 3	B	160	169	parallel
Strand 4	B	253	258	parallel
Strand 5	B	329	332	anti-parallel
Strand 6	B	285	293	anti-parallel
Strand 7	B	352	353	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	394	398	anti-parallel
Strand 3	B	389	391	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D3Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D3Z