Analysis of interatomic Contacts of Structural Units in PDB entry:
8D44

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8D44 entry

There are 4 chains in PDB entry 8D44 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 2	VAL 344
C	ALA 2	VAL 344
B	ALA 2	VAL 344
A	ALA 2	VAL 344

There are 57 helices in PDB entry 8D44. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	9	24	Right-handed alpha
Helix 2	AA2	D	36	46	Right-handed alpha
Helix 3	AA3	D	52	64	Right-handed alpha
Helix 4	AA4	D	80	85	Right-handed alpha
Helix 5	AA5	D	93	101	Right-handed alpha
Helix 6	AA6	D	130	141	Right-handed alpha
Helix 7	AA7	D	160	182	Right-handed alpha
Helix 8	AA8	D	198	220	Right-handed alpha
Helix 9	AA9	D	223	227	Right-handed 310
Helix 10	AB1	D	245	259	Right-handed alpha
Helix 11	AB2	D	276	289	Right-handed alpha
Helix 12	AB3	D	308	315	Right-handed alpha
Helix 13	AB4	D	320	338	Right-handed alpha
Helix 14	AB5	C	9	24	Right-handed alpha
Helix 15	AB6	C	36	45	Right-handed alpha
Helix 16	AB7	C	46	48	Right-handed 310
Helix 17	AB8	C	52	65	Right-handed alpha
Helix 18	AB9	C	80	85	Right-handed alpha
Helix 19	AC1	C	93	101	Right-handed alpha
Helix 20	AC2	C	130	141	Right-handed alpha
Helix 21	AC3	C	160	182	Right-handed alpha
Helix 22	AC4	C	198	220	Right-handed alpha
Helix 23	AC5	C	223	227	Right-handed 310
Helix 24	AC6	C	245	261	Right-handed alpha
Helix 25	AC7	C	276	289	Right-handed alpha
Helix 26	AC8	C	308	315	Right-handed alpha
Helix 27	AC9	C	320	338	Right-handed alpha
Helix 28	AD1	B	9	24	Right-handed alpha
Helix 29	AD2	B	36	45	Right-handed alpha
Helix 30	AD3	B	46	48	Right-handed 310
Helix 31	AD4	B	52	65	Right-handed alpha
Helix 32	AD5	B	67	72	Right-handed 310
Helix 33	AD6	B	80	85	Right-handed alpha
Helix 34	AD7	B	93	101	Right-handed alpha
Helix 35	AD8	B	130	141	Right-handed alpha
Helix 36	AD9	B	160	181	Right-handed alpha
Helix 37	AE1	B	198	220	Right-handed alpha
Helix 38	AE2	B	223	227	Right-handed 310
Helix 39	AE3	B	245	259	Right-handed alpha
Helix 40	AE4	B	276	289	Right-handed alpha
Helix 41	AE5	B	308	315	Right-handed alpha
Helix 42	AE6	B	321	340	Right-handed alpha
Helix 43	AE7	A	9	24	Right-handed alpha
Helix 44	AE8	A	36	45	Right-handed alpha
Helix 45	AE9	A	46	48	Right-handed 310
Helix 46	AF1	A	52	65	Right-handed alpha
Helix 47	AF2	A	67	72	Right-handed 310
Helix 48	AF3	A	80	85	Right-handed alpha
Helix 49	AF4	A	93	101	Right-handed alpha
Helix 50	AF5	A	130	141	Right-handed alpha
Helix 51	AF6	A	160	182	Right-handed alpha
Helix 52	AF7	A	198	220	Right-handed alpha
Helix 53	AF8	A	223	227	Right-handed 310
Helix 54	AF9	A	245	259	Right-handed alpha
Helix 55	AG1	A	276	289	Right-handed alpha
Helix 56	AG2	A	308	315	Right-handed alpha
Helix 57	AG3	A	321	338	Right-handed alpha

There are 8 sheets in PDB entry 8D44. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	74	79	parallel
Strand 3	D	104	108	parallel
Strand 4	D	145	153	parallel
Strand 5	D	184	192	parallel
Strand 6	D	228	229	parallel
Strand 7	D	267	270	parallel
Strand 8	D	297	302	parallel
Strand 9	D	29	32	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	115	first strand
Strand 2	D	123	126	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	74	79	parallel
Strand 3	C	104	108	parallel
Strand 4	C	145	154	parallel
Strand 5	C	184	193	parallel
Strand 6	C	228	229	parallel
Strand 7	C	267	270	parallel
Strand 8	C	297	302	parallel
Strand 9	C	29	32	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	115	first strand
Strand 2	C	123	126	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	74	79	parallel
Strand 3	B	104	108	parallel
Strand 4	B	145	154	parallel
Strand 5	B	184	193	parallel
Strand 6	B	228	229	parallel
Strand 7	B	267	270	parallel
Strand 8	B	297	302	parallel
Strand 9	B	29	32	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	123	126	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	74	79	parallel
Strand 3	A	104	108	parallel
Strand 4	A	145	154	parallel
Strand 5	A	184	193	parallel
Strand 6	A	228	229	parallel
Strand 7	A	267	270	parallel
Strand 8	A	297	302	parallel
Strand 9	A	29	32	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	123	126	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8D44

Analysis of interatomic Contacts of Structural Units in PDB entry:
8D44